View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_3 (Length: 507)
Name: NF15193_low_3
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 37 - 507
Target Start/End: Original strand, 33840310 - 33840774
Alignment:
| Q |
37 |
gatgaatcgtcgtt-ttattaatatatctcattttgattacctaaagaaaacgtattcataannnnnnngtgatattaaaatgaatcatgtctctctttt |
135 |
Q |
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| T |
33840310 |
gatgaatcgtcgttattattaatatatctcattttgtcttcttaaagaaaacatattcataattttttgg-gatattaaaatgaatcacgtctctctttt |
33840408 |
T |
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| Q |
136 |
actactccgtacttctccatcatgcggacgatcataatgtcaactgaaatgggcctctcacacccatagcataaaaaatgtgtgtcactcatccatctta |
235 |
Q |
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| T |
33840409 |
actactccgtacttctccatcatgcggacaatcataatgtcaactgaaatgggcctctcacacgcatagcataaaaaatgtgtgtcactcatccatctta |
33840508 |
T |
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| Q |
236 |
tctttcaaacgtgtcgttcatctaatcgaacatagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaca |
335 |
Q |
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| T |
33840509 |
tctttcaaacgtgtcgttcatctaatcgaacacagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaaa |
33840608 |
T |
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| Q |
336 |
ctatatgtcatgcaaaagcatccctcataatacatacatggcagtattaattattttaagccacctaatgcaaaacaagacnnnnnnnncatataaataa |
435 |
Q |
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| T |
33840609 |
ctatatgtcatgcaaaagcatccctcataatacat-----gcagtattaattattttaagccacctaatgcaaaacaagac-aaaaaaacatataaataa |
33840702 |
T |
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| Q |
436 |
ggtactagaaaacaaataactagccattcattttgtagtgacacatggcttgtttctgctttcttgttgatc |
507 |
Q |
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| T |
33840703 |
ggtactagaaaacaaatagctagcctttgattttgtggagacacatggcttgtttctgctttcttgttgatc |
33840774 |
T |
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