View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15193_low_4 (Length: 445)

Name: NF15193_low_4
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15193_low_4
NF15193_low_4
[»] chr6 (5 HSPs)
chr6 (1-426)||(17239812-17240239)
chr6 (5-380)||(19805183-19805560)
chr6 (5-369)||(22518297-22518663)
chr6 (266-379)||(30408461-30408574)
chr6 (5-151)||(14756893-14757037)
[»] chr3 (1 HSPs)
chr3 (5-380)||(1195700-1196077)
[»] chr2 (1 HSPs)
chr2 (5-377)||(25215129-25215506)
[»] chr4 (2 HSPs)
chr4 (266-369)||(8492693-8492796)
chr4 (5-151)||(8492430-8492576)
[»] chr7 (1 HSPs)
chr7 (17-83)||(24601738-24601804)
[»] chr5 (1 HSPs)
chr5 (17-78)||(19995946-19996007)
[»] chr1 (1 HSPs)
chr1 (114-150)||(8312815-8312851)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 17239812 - 17240239
Alignment:
Q  1 agtttgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  17239812 agtttgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggtcaaatttacacttataatagataaatcctagtgtggttcaagatg 17239911  T
Q  101 tagaaaatcgaagcttgttttagcttgtgaaagaagtggcgattataaaggnnnnnnn-gtctaaatgagaagacacatgttcaaggaaatgtcggtgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||| ||||    
T  17239912 tagaaaatcgaagcttgttttagcttgtgaaagaagtggcgagtataaaggaaaaaaaagtctaaatgagaagacacatgttcaaggaaatgtcgatgac 17240011  T
Q  200 cacatgaagttgcgtggttatttcaattttgtaaaactctag--tctaattcttgtttcaaagattgtataatcataagataaagccaaagttagaatgt 297  Q
    | ||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17240012 c-catgaagttgcgtggttatttcaatttagtaaaactctagagtctgattcttgtttcaaagattgtataatcataagatgaagccaaagttagaatgt 17240110  T
Q  298 catatgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgataaaatcaaaaaatattccgtgtaatctattat 397  Q
    ||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17240111 catatgttgactgactgtttaattgcaaacgagacaaagattgttggtgacatgacaagaaatttgataaaatcaaaaaatattccgtgtaatctgttat 17240210  T
Q  398 ggtggcatgtatatactacatgtccggta 426  Q
    ||| |||||||||||||||||||||||||    
T  17240211 ggtagcatgtatatactacatgtccggta 17240239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 19805183 - 19805560
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||||   |||||| ||||||||||||||||||||| |||||||  || |||||    
T  19805183 tgaagatagagaggagatgattaactgggctcgtggtcaagcaatagaggcgggatttacgcttataatagataaatcctatagtggttctggacgtaga 19805282  T
Q  105 aaatcgaagcttgttttagcttgtgaaagaagtggcgattataaagg--nnnnnnngtctaaatgagaagacacatgttcaaggaaatgtcggtgaccac 202  Q
    ||| |||||||||||||||||| ||||||||||||||| ||||||||         ||||||| ||||||  ||| |||||||||||||| |||| || |    
T  19805283 aaaccgaagcttgttttagcttttgaaagaagtggcgagtataaaggaacaaagaagtctaaacgagaaggaacaggttcaaggaaatgtgggtgtcc-c 19805381  T
Q  203 atgaagttgcgtggttatttcaattttgtaaaactct--agtctaattcttgtttcaaagattgtataatcataagataaagccaaagttagaatgtcat 300  Q
     | | |||||| |||||||| | |     |||||| |  ||||||| | ||||||| | || |  |||||||||||||  |||||||||||||| |||||    
T  19805382 tttaggttgcgcggttattttagtgcaacaaaactttggagtctaaatattgtttc-aggactacataatcataagatggagccaaagttagaaggtcat 19805480  T
Q  301 atgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgataaaatcaaaaaatat 380  Q
    |||||||| |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  19805481 atgttggctggtcgtttaactgcaaaagagtcaaagattgttggtgacatgacaagaaatttgataaaaccgaaaaatat 19805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 369
Target Start/End: Original strand, 22518297 - 22518663
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||    ||||| ||||||||| ||||||||||| |||||||  || |||||    
T  22518297 tgaagatagagaggagatgattaattgggctcgttgtcaatcaatagaggcggcgtttacgcttataataaataaatcctatagtggttccggacgtaga 22518396  T
Q  105 aaatcgaagcttgttttagcttgtgaaagaagtggcgattataaagg--nnnnnnngtctaaatgagaagacacatgttcaaggaaatgtcggtgaccac 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||         ||||||| ||||||   || |||||||||||||| ||||  | |    
T  22518397 aaatcgaagcttgttttagcttgtgaaagaagtggcgagtataaaggaacaaataagtctaaacgagaaggagcaggttcaaggaaatgtgggtg-tctc 22518495  T
Q  203 atgaagttgcgtggttatttcaattttgtaaaactct--agtctaattcttgtttcaaagattgtataatcataagataaagccaaagttagaatgtcat 300  Q
     | | |||||| |||||||| | |     |||||| |  ||||||| | ||||||| | || ||||||||||||||||  |||||||||||||| |||||    
T  22518496 tttaggttgcgcggttattttagtgcaacaaaactttggagtctaaatattgtttc-aggactgtataatcataagatggagccaaagttagaaggtcat 22518594  T
Q  301 atgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgataaaa 369  Q
    |||||||| |   |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  22518595 atgttggctggtcgtttaactacaaaggagtcaaagattgttggtgacatgacaagaaatttgataaaa 22518663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 30408461 - 30408574
Alignment:
Q  266 ataatcataagataaagccaaagttagaatgtcatatgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgat 365  Q
    ||||||||||||  |||| |||||||| | ||||||| |||| ||  ||||||| |||||||||| ||||| |||||| |||||||||||| |||||| |    
T  30408461 ataatcataagagtaagcaaaagttagtaggtcatattttggtcggttgtttaaatgcaaaagagccaaagcttgttgttgacatgacaaggaatttggt 30408560  T
Q  366 aaaatcaaaaaata 379  Q
     ||| |||||||||    
T  30408561 gaaaccaaaaaata 30408574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 14756893 - 14757037
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||| || |||||||| ||  |||||||||||||||||  |||| ||||||  | ||||||||||| ||||||| ||| ||| | | | |||    
T  14756893 tgaagatatagacgaaatgattaactga-ctcgttgtcaagcaataatggccgaatttaggcatataatagatagatcctatagtgattccaaacg-aga 14756990  T
Q  105 aaatcgaagcttgttttagcttgtgaaagaagtggcgattataaagg 151  Q
    ||  ||||||| ||||||||||||||||||||||| || ||||||||    
T  14756991 aacccgaagctcgttttagcttgtgaaagaagtggagactataaagg 14757037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 1195700 - 1196077
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||||||||| ||||||   || |||||    
T  1195700 tgaagatagagaggagatgattaactgggctcgttgtcaagcaatagaggcgggatttacgcttataatagataaatcctatagtggtttgggacgtaga 1195799  T
Q  105 aaatcgaagcttgttttagcttgtgaaagaagtggcgattataaagg--nnnnnnngtctaaatgagaagacacatgttcaaggaaatgtcggtgaccac 202  Q
    ||| ||||||||||||||||||||||||||||||| || ||||||||         ||||||| ||||||  ||| |||||||||||||| |||| || |    
T  1195800 aaaccgaagcttgttttagcttgtgaaagaagtggagagtataaaggaacaaagaagtctaaacgagaaggaacaggttcaaggaaatgtgggtgtcc-c 1195898  T
Q  203 atgaagttgcgtggttatttcaattttgtaaaactct--agtctaattcttgtttcaaagattgtataatcataagataaagccaaagttagaatgtcat 300  Q
     | | |||||| |||||||| | |     |||||| |  ||||||| | ||||||| | || |  |||||||||||||  |||||||||||||| |||||    
T  1195899 tttaggttgcgcggttattttagtgcaacaaaactttggagtctaaatattgtttc-aggactacataatcataagatggagccaaagttagaaggtcat 1195997  T
Q  301 atgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgataaaatcaaaaaatat 380  Q
    |||||||| |   |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  1195998 atgttggctggtcgtttaactacaaaagagtcaaagattgttggtgacatgacaagaaatttgataaaaccgaaaaatat 1196077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 377
Target Start/End: Complemental strand, 25215506 - 25215129
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||||||||||||||| ||||||  ||||||||||||||||||   ||||   ||||||||||||||||||||| ||| |||  || ||| |    
T  25215506 tgaagatagagaggagatgattaaatgggctaattgtcaagcaatagaggcgggatttgagcttataatagataaatcctatagtgattccggacgtaaa 25215407  T
Q  105 aaatc---gaagcttgttttagcttgtgaaagaagtggcgattataaaggnnnnnnn--gtctaaatgagaagacacatgttcaaggaaatgtcggtgac 199  Q
    |||     |||||||||||||||||||||||||||||| || || |||||         || |||| |||||| || | |||||||||||||  |||| |    
T  25215406 aaaaaactgaagcttgttttagcttgtgaaagaagtggggagtacaaaggaacaaaaaagtgtaaacgagaaggcataggttcaaggaaatgcaggtgtc 25215307  T
Q  200 cacatgaagttgcgtggttatttcaattttgtaaaactctag--tctaattcttgtttcaaagattgtataatcataagataaagccaaagttagaatgt 297  Q
    | | | | |||||  |||||||| | | | | ||||||||||  ||| | | ||||||||  || || |||||||||||||  |||||||||||||| ||    
T  25215306 c-ctttaggttgctcggttattttagtgtagcaaaactctagagtctgaatattgtttcag-gactgcataatcataagatggagccaaagttagaaggt 25215209  T
Q  298 catatgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgataaaatcaaaaaa 377  Q
    ||||||||||| |   ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  25215208 catatgttggctggtcgtttaactgcaaaagattcaaagattgttggtgacatgacaagaaatttgataaaaccaaaaaa 25215129  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 8492693 - 8492796
Alignment:
Q  266 ataatcataagataaagccaaagttagaatgtcatatgttggccgactgtttaactgcaaaagagacaaagattgttggtgacatgacaagaaatttgat 365  Q
    |||||||||||||| |||||||||||||| | ||||||||||| |    ||||||| |||||||| ||||||  ||||||||||||||||||||||||||    
T  8492693 ataatcataagatagagccaaagttagaaggacatatgttggctggtcatttaacttcaaaagagtcaaagaacgttggtgacatgacaagaaatttgat 8492792  T
Q  366 aaaa 369  Q
    ||||    
T  8492793 aaaa 8492796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 8492430 - 8492576
Alignment:
Q  5 tgaagataaagaggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcctattgtggttcaagatgtaga 104  Q
    |||||||| ||| |||||| | || |||||||||| ||||| ||||||||    |||||  |||||| |||||||||| |||  |||||   ||  ||||    
T  8492430 tgaagatagagatgagatgttcaactgggctcgttatcaagtaatagaggttggatttaagcttatattagataaatcatatattggttatggacataga 8492529  T
Q  105 aaatcgaagcttgttttagcttgtgaaagaagtggcgattataaagg 151  Q
    ||| | |||||||||||||||||||||||||||| ||| ||||||||    
T  8492530 aaaccaaagcttgttttagcttgtgaaagaagtgacgagtataaagg 8492576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 24601738 - 24601804
Alignment:
Q  17 ggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagataaatcc 83  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  24601738 ggagatgattaattgggttcgttgtcaaacaatataggccaaatttacgcttataatagataaatcc 24601804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 19996007 - 19995946
Alignment:
Q  17 ggagatgattaattgggctcgttgtcaagcaatagaggccaaatttacacttataatagata 78  Q
    ||||||||||||||| ||||||| |||||||||| |||     |||||||||||||||||||    
T  19996007 ggagatgattaattgagctcgttttcaagcaataaaggtaggttttacacttataatagata 19995946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 8312815 - 8312851
Alignment:
Q  114 cttgttttagcttgtgaaagaagtggcgattataaag 150  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  8312815 cttgttttagcttgttaaagaagtggcgagtataaag 8312851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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