View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_5 (Length: 437)
Name: NF15193_low_5
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 2669447 - 2669866
Alignment:
| Q |
18 |
taacatatgtaaaaagttttgattttaggaacaaacattgcaaaatgaaaagttccacttctgcaaaactccaaatctacttcatcttatctctatattt |
117 |
Q |
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| T |
2669447 |
taacatatgtaaaaagttttgattttaggaacaaacattgcaaaatgaaaagttccacttcttcaaaactccaaatctacttcatcttatctctatattt |
2669546 |
T |
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| Q |
118 |
tttcaatggtgtaatctcttctgataccttaactgcatcacaatctcttggttccaaccaaacccttgtatctccacaaaaagtatttgagtttggtttc |
217 |
Q |
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| T |
2669547 |
tttcaatggtgtaatctcttctgataccttaactgcatcacaatctcttggttccaaccaaacccttatatctccacaaaaagtatttgagtttggtttc |
2669646 |
T |
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| Q |
218 |
ttcaacacaaccacttcaaaatggtacttaggtatatggtacgaagatgttccagataaaatatttgtttgggtggcaaatagagacacccctcttgaaa |
317 |
Q |
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| T |
2669647 |
ttcaacacaaccacttcaaaatggtacttaggtatatggtacaaagatgttccagataaaatatttgtttgggtggcaaatagagacacccctcttgaaa |
2669746 |
T |
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| Q |
318 |
attctaatggaactctcaagattcaagatggtggaaaattggttcttttcaaccaaacagataatcctatatggtcatcaaatcaaactatttcctctgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2669747 |
attctaatggaactctcaagattcaagatggtggaaaattggttcttttcaaccaaacagataatcctatatggtcatcaaatcaaactatttcctctgt |
2669846 |
T |
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| Q |
418 |
tacaaaccctgttcttcatc |
437 |
Q |
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| T |
2669847 |
tacagaccctgttcttcatc |
2669866 |
T |
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