View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_7 (Length: 386)
Name: NF15193_low_7
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 8690993 - 8691363
Alignment:
| Q |
1 |
acgcaaatagtaaaaggtttaacagaaggacacagcgtggatactggaaagccactggtcttgaccgtaagattaaggttagaggcactgacaatgttat |
100 |
Q |
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| T |
8690993 |
acgcaaatagtaaaaggtttaacagaaggacacagtgtggatactggaaagccactggtcttgaccgtaagattaaggttagaggcactgacaatgttat |
8691092 |
T |
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| Q |
101 |
tgggataaagaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataac |
200 |
Q |
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| T |
8691093 |
tgggataaaaaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataac |
8691192 |
T |
|
| Q |
201 |
caggtttgttttgttacaacaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagnnnnnnntgttgattatcctccaaaattttg |
300 |
Q |
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| T |
8691193 |
caggtttgttttgttacaacaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagaaaaaaatgttgattatcctccaaaattttg |
8691292 |
T |
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| Q |
301 |
tagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaat |
371 |
Q |
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| T |
8691293 |
tagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaat |
8691363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 14372392 - 14372237
Alignment:
| Q |
63 |
gaccgtaagattaaggttagaggcactgacaatgttattgggataaagaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactggg |
162 |
Q |
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| T |
14372392 |
gaccggaagattaaggttaggggtagcaataatattattgggattaagaaaactcttgtttactataatggtcgtgttcctggtgttaaaagcagccggg |
14372293 |
T |
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| Q |
163 |
tgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
219 |
Q |
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| T |
14372292 |
tgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaa |
14372237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 8705317 - 8705491
Alignment:
| Q |
45 |
tggaaagccactggtcttgaccgtaagattaaggttagaggcactgacaatgttattgggataaagaaaacacttgtgttctataatggttgtgttcctg |
144 |
Q |
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| T |
8705317 |
tggaaagctactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctg |
8705416 |
T |
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| Q |
145 |
gtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaa |
219 |
Q |
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| T |
8705417 |
gtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaa |
8705491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 8705944 - 8706015
Alignment:
| Q |
289 |
tccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaa |
360 |
Q |
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| T |
8705944 |
tccaaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaaagctgaaaaggaa |
8706015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 8744567 - 8744634
Alignment:
| Q |
293 |
aaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaa |
360 |
Q |
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| T |
8744567 |
aaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaatactgaagaggaa |
8744634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 8723260 - 8723350
Alignment:
| Q |
277 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgata |
367 |
Q |
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| T |
8723260 |
tgttgattacgctccaaaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgata |
8723350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 14372018 - 14371953
Alignment:
| Q |
280 |
tgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaa |
345 |
Q |
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| T |
14372018 |
tgattatcatccgaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaa |
14371953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 8724711 - 8724780
Alignment:
| Q |
277 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaa |
347 |
Q |
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| T |
8724711 |
tgttgattatcatccaaa-ttttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaa |
8724780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 8739912 - 8739994
Alignment:
| Q |
279 |
ttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaa |
361 |
Q |
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| T |
8739912 |
ttgattaccctccaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagaggaaa |
8739994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8740485 - 8740563
Alignment:
| Q |
137 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgtt |
215 |
Q |
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| T |
8740485 |
tgttcctggtgttaagactaattggatcattcatgaatatcatgatgccatctttgatgatcaccaggtttgttatgtt |
8740563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 8723844 - 8723944
Alignment:
| Q |
137 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaactttta |
236 |
Q |
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| T |
8723844 |
tgttcctggtgttaagaccaattggatcattcatgagtatcatgatgtcaccttagaggattcccaggtttgttttgttacattaaggttttaactttta |
8723943 |
T |
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| Q |
237 |
a |
237 |
Q |
| |
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| |
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|
| T |
8723944 |
a |
8723944 |
T |
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