View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_8 (Length: 346)
Name: NF15193_low_8
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 13414091 - 13413773
Alignment:
| Q |
10 |
aagaatatgctgaacagctaaagagttgaatatcaacgacaccctttaactacgtccctgattttacgagattttccacctatgttatattatttgattg |
109 |
Q |
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| T |
13414091 |
aagaatatgctgaacagctaaagagttgaatatcaaagacaccctttaactacgtccctgattttacgagattttccacctatgttatattatttggttg |
13413992 |
T |
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| Q |
110 |
gccctcatatgagtagataagaggtgcaaagaannnnnnn-catgtaaaatacattaaaaaatgtttattaatacatgcatgtgtatttaaaatgttttt |
208 |
Q |
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| T |
13413991 |
gccctcatatgagtagataagaggtgcaaagaattttttttcatgtaaaatacattaaaaaatgtttattaatacatgcatgtgtatttaaaatgttttt |
13413892 |
T |
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| Q |
209 |
ggatcttgaggagagtgaaaaactgattaaaaaagttaaaaccgtattaaatacggcatttgcgtttgaaaaacatttctcttgtgtacaatgtattctt |
308 |
Q |
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| T |
13413891 |
ggatcttgaggagagtgaaaaactgattaaaaaagttaaaaccgtatttaatacggcatttgcgtttgaaaaacatttctcttgtgtacattgtattctt |
13413792 |
T |
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| Q |
309 |
tgtagttttagacttaatttgt |
330 |
Q |
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| T |
13413791 |
t---gttttagacttaatttgt |
13413773 |
T |
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