View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15193_low_9 (Length: 346)

Name: NF15193_low_9
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15193_low_9
NF15193_low_9
[»] chr5 (1 HSPs)
chr5 (31-253)||(3465422-3465645)
[»] chr8 (3 HSPs)
chr8 (5-253)||(4040439-4040693)
chr8 (97-250)||(42241350-42241509)
chr8 (148-222)||(36650580-36650655)
[»] chr6 (1 HSPs)
chr6 (97-253)||(12834030-12834192)
[»] chr4 (2 HSPs)
chr4 (153-224)||(50655223-50655294)
chr4 (165-222)||(48309773-48309830)
[»] chr7 (3 HSPs)
chr7 (147-224)||(46028588-46028666)
chr7 (165-222)||(26557974-26558031)
chr7 (150-224)||(40188335-40188409)
[»] chr3 (1 HSPs)
chr3 (165-224)||(1762140-1762199)
[»] chr2 (1 HSPs)
chr2 (148-222)||(29682571-29682645)
[»] chr1 (1 HSPs)
chr1 (165-224)||(52372547-52372606)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 3465645 - 3465422
Alignment:
Q  31 actgaaataattaattgtatggttcaaatgcattttaacccccgtaatagtttttagcttaaaaattaggtggttggggtgggagtttgtgtctcctatg 130  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3465645 actgaaataattaattatatggttcaaatgcattttaacccccataatagtttttagcttaaaaattaggtggttggggtgggagtttgtgtctcctatg 3465546  T
Q  131 ggtctagtccagcag-gtccttcacgggattaggtgggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatctagata 229  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |    
T  3465545 ggtctagtccggcagtgtccttcacgggattaggtgggggaagagtgttaggctaggtttactcatcgtttgacatgttgttatttggaccatctagaca 3465446  T
Q  230 ttcagaaacgaccttattttttct 253  Q
    | ||||||||||||||||||||||    
T  3465445 tccagaaacgaccttattttttct 3465422  T

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Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 4040693 - 4040439
Alignment:
Q  5 tgatgactgactatcaagcatcttctactgaaataattaattgtatggttcaaatgcattttaacccccgtaatagtttttagcttaaaaattaggtggt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4040693 tgatgactgactatcaagcatcttctactcaaataattaattgtatggttcaaatgcattttaacccccataatagtttttagcctaaaaattaggtggt 4040594  T
Q  105 tggggtgggagtttgtgtctcctatgggtctagtccagcag-----gtccttcacgggattaggt-gggggaagagtgttagggtaggtttactcattgt 198  Q
    || |||||||||||||||||||||||||||||| ||| |||     || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  4040593 tgtggtgggagtttgtgtctcctatgggtctagcccaacagtttctgttcttcacgggattaggtggggggaagagtgttaggctaggtttgctcattgt 4040494  T
Q  199 ttggcatgttgttatttggaccatctagatattcagaaacgaccttattttttct 253  Q
    ||||||||||||||| |||||||||| || || ||||||||||||||||||||||    
T  4040493 ttggcatgttgttatctggaccatctggacatccagaaacgaccttattttttct 4040439  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 42241509 - 42241350
Alignment:
Q  97 taggtggttggggtgggagtttgtgtctcctatgggtctagtccagcag-----gtccttcacgggattaggtggggg-aagagtgttagggtaggttta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||     |||||||||||||||||||||||| ||||| |||||  |||||||     
T  42241509 taggtggttggggtgggagtttgtgtctcctatgggtctagcccagcagtttccgtccttcacgggattaggtggggggaagagcgttagactaggtttg 42241410  T
Q  191 ctcattgtttggcatgttgttatttggaccatctagatattcagaaacgaccttattttt 250  Q
    ||||||||||| |||| ||||||||| ||||||| || || |||||||||||||||||||    
T  42241409 ctcattgtttgacatgctgttatttgaaccatctggacatccagaaacgaccttattttt 42241350  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 36650655 - 36650580
Alignment:
Q  148 ccttcacgggattaggtgggggaag-agtgttagggtaggtttactcattgtttggcatgttgttatttggaccat 222  Q
    |||||||||| ||||| ||||| || || |||||| ||||||| ||| |||||||||||| |||||||||||||||    
T  36650655 ccttcacgggcttaggagggggtaggagagttaggttaggtttgctccttgtttggcatgctgttatttggaccat 36650580  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 12834192 - 12834030
Alignment:
Q  97 taggtggttggggtgggagtttgtgtctcctatgggtctagtccagcaggtccttc-----acgggattaggt-gggggaagagtgttagggtaggttta 190  Q
    |||||||||||| |||||||||||    ||||||||||||| ||||||| |||||      || || |||||| |||||||  |||||||  ||||||||    
T  12834192 taggtggttgggttgggagtttgtcatccctatgggtctagcccagcagttcctttcctttacaggtttaggtagggggaatcgtgttagaataggttta 12834093  T
Q  191 ctcattgtttggcatgttgttatttggaccatctagatattcagaaacgaccttattttttct 253  Q
     | ||||||||||||| ||||||||||||||||| ||| ||| | || || ||||||||||||    
T  12834092 tttattgtttggcatgctgttatttggaccatctggatgttccggaatgatcttattttttct 12834030  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 50655294 - 50655223
Alignment:
Q  153 acgggattaggtgggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatct 224  Q
    ||||| ||||| |||||||||| |||||| ||||||| ||| | |||||||||| |||||||||||||||||    
T  50655294 acgggcttaggagggggaagagagttaggttaggtttgctcctggtttggcatgctgttatttggaccatct 50655223  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 48309830 - 48309773
Alignment:
Q  165 gggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccat 222  Q
    |||||||||| |||||| ||||||| ||  ||||||||||| ||||||||||||||||    
T  48309830 gggggaagagagttaggttaggtttgcttcttgtttggcatattgttatttggaccat 48309773  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 46028666 - 46028588
Alignment:
Q  147 tccttcacgggattaggt-gggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatct 224  Q
    ||||| ||||| |||||| |||||||| |||||||  |||||||||| | ||||||||||| |||||||||||||||||    
T  46028666 tcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcatgctgttatttggaccatct 46028588  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 26558031 - 26557974
Alignment:
Q  165 gggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccat 222  Q
    |||||| ||| |||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  26558031 gggggaggagagttaggttaggtttgcttcttgtttggcatgttgttatttggaccat 26557974  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 40188409 - 40188335
Alignment:
Q  150 ttcacgggattaggtgggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatct 224  Q
    |||||||| ||||| |||||||||| |||||| |||| || ||  ||||||| |||| |||| ||||||||||||    
T  40188409 ttcacggggttaggagggggaagagagttaggttaggattgcttcttgtttgacatggtgttgtttggaccatct 40188335  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 1762199 - 1762140
Alignment:
Q  165 gggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatct 224  Q
    |||||||| |||||||  || |||||||  ||||||||||||||||||||||||||||||    
T  1762199 gggggaagcgtgttagaatatgtttacttcttgtttggcatgttgttatttggaccatct 1762140  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 29682571 - 29682645
Alignment:
Q  148 ccttcacgggattaggtgggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccat 222  Q
    |||| ||||| || || |||||| ||| |||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  29682571 cctttacggggttgggagggggaggagagttaggttaggtttgcttcttgtttggcatgttgttatttggaccat 29682645  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 52372547 - 52372606
Alignment:
Q  165 gggggaagagtgttagggtaggtttactcattgtttggcatgttgttatttggaccatct 224  Q
    |||||||| |||||||  || ||||||| ||||||||||||| | |||||||||||||||    
T  52372547 gggggaagcgtgttagaatatgtttacttattgtttggcatgctattatttggaccatct 52372606  T

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