View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15194_high_3 (Length: 423)
Name: NF15194_high_3
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15194_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 31809928 - 31810048
Alignment:
| Q |
50 |
gcaaagaaagcaagtaaattgtaccagcccacgtgcatagacccataatgtactgtttcagagaaacgaagcagacccaaaggttcaaggtctttctgca |
149 |
Q |
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| T |
31809928 |
gcaaagaaagcaagtaaattgtaccagcccacgtgcatagacccataatgtactgtttcagagaaacgaagcagacccaaaggttcaaggtctttctgca |
31810027 |
T |
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| Q |
150 |
ataccgtaccataggagcatg |
170 |
Q |
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| T |
31810028 |
ataccgtaccataggagcatg |
31810048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 275 - 423
Target Start/End: Original strand, 31810151 - 31810299
Alignment:
| Q |
275 |
ccttcaaaatatagagaaatacttagaaacaaatccaaattaaagttttggggcacacaaataca-nnnnnnnnataaaaatggtttaataatattaaat |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||| |
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| T |
31810151 |
ccttcaaaatatagagaaatacttagaaacaaatccaaattaaagttttggggcacacaaatacattttttttttttaaaatggtttgaaaatattaaat |
31810250 |
T |
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| Q |
374 |
gacgtgactaatttatttttcttttcatctcttttgattattgtgtctct |
423 |
Q |
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| T |
31810251 |
gatgtgactaatttatttatcttttcatttc-tttgattattgtgtctct |
31810299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 37528974 - 37528933
Alignment:
| Q |
351 |
aaaatggtttaataatattaaatgacgtgactaatttatttt |
392 |
Q |
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| T |
37528974 |
aaaatggtttaataatattgagtgatgtgactaatttatttt |
37528933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 15731617 - 15731645
Alignment:
| Q |
370 |
aaatgacgtgactaatttatttttctttt |
398 |
Q |
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| T |
15731617 |
aaatgacgtgactaatttatttttctttt |
15731645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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