View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15194_low_1 (Length: 738)
Name: NF15194_low_1
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15194_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 9 - 720
Target Start/End: Original strand, 52729593 - 52730307
Alignment:
| Q |
9 |
acatcatcccaaaaagtcacagacaaaagctgatatctaaaaagattaatcaagatcatgttcaaatgatgccaaagacgaaatcattgttggaaagact |
108 |
Q |
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| T |
52729593 |
acatcatcccaaaaagtcatagacaaaagctgatatctaaaaagattaatcaagatcatgttcaaatgatgccaaagacgaaatcattgttggaaagact |
52729692 |
T |
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| Q |
109 |
ctcacacatacgtaattagcagacaaaaatgcttaatattctatgaaatcttcatcttccatatctagatccacccatggggatgagataaggaagatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52729693 |
ctcacacatacgtaattagcagacaaaaatgcttaatattctctgaaatcttcatcttccatatctagatccacccatggggatgagataaggaagatga |
52729792 |
T |
|
| Q |
209 |
catgacataatcttaagaaaatcaacgataacttgccttgcctgaataaactctaaaatttgaatgtcctagtatgagaatgtatggtgagtcattatca |
308 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52729793 |
catgatataatcttaaaaaaatcaacgataacttgccttgcctgaataaactctagaatttgaatgtcctagtatgagaatgtatggtgagtcattgtca |
52729892 |
T |
|
| Q |
309 |
ataaaaatgatttggatatgtaacttgagattgtccgaaatttataaagttaaagagttgaacaatcaatt--accctaaatgtatatatcctacaataa |
406 |
Q |
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| T |
52729893 |
ataaaaatgatttggatatgtaacttgagattgtccgaaatttatgaagttaaagagttgaacaatcaattacaccctaaatgtatatatcctacaataa |
52729992 |
T |
|
| Q |
407 |
aagcgagtctcattaacatggacgcaaggaacaacgttccagatacaattataattaaattagttatcataccaaagatatacacctcatttaccattcc |
506 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52729993 |
aaacgagtctcattaacatggacgtaaggaacaacgttccagatacaattataattaaattagttatcataccaaagatatacacctcatttaccattcc |
52730092 |
T |
|
| Q |
507 |
taaatttaaaactggatttaaagatataaactgttttttcccccatatcaagttaagttattttttcaaatgtgaattcaaactacctatgctcttaaaa |
606 |
Q |
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| T |
52730093 |
t-aatttaaaactggatttaaagatatcaactgtttttt-ccccatatcaagttaagttattttttcaaatgtgaattcaaactacctatgctcttaaaa |
52730190 |
T |
|
| Q |
607 |
gtctca---attattcattcaaaaagataaattctatcttaaatctacgaagataacatctaaattatattataatgacttttaacgagatatatgtaat |
703 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730191 |
gtctcaattattattcattcaaaaagataaattatatcttaaatctacgaagataacatctaaattatattataatgacttttaacgagatatatgtaat |
52730290 |
T |
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| Q |
704 |
ccatgaaaatgaacatg |
720 |
Q |
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| T |
52730291 |
ccatgaaaatgaacatg |
52730307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 44552240 - 44552167
Alignment:
| Q |
311 |
aaaaatgatttggatatgtaacttgagattgtccgaaatttataaagttaaagagttgaacaatcaattaccct |
384 |
Q |
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|||| ||| |||||||||||||||||||||||| || |||| | |||||| ||||||||||| |||||||||| |
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| T |
44552240 |
aaaagtgacttggatatgtaacttgagattgtctgagatttctttagttaatgagttgaacaaccaattaccct |
44552167 |
T |
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