View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15194_low_11 (Length: 232)

Name: NF15194_low_11
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15194_low_11
NF15194_low_11
[»] chr8 (6 HSPs)
chr8 (15-215)||(7511140-7511340)
chr8 (13-143)||(13497756-13497892)
chr8 (17-49)||(31129002-31129034)
chr8 (15-52)||(12272005-12272042)
chr8 (17-53)||(15057078-15057114)
chr8 (17-49)||(44503760-44503792)
[»] chr5 (9 HSPs)
chr5 (15-215)||(27405564-27405770)
chr5 (80-215)||(30644417-30644551)
chr5 (75-139)||(9958243-9958306)
chr5 (15-53)||(36571941-36571979)
chr5 (17-62)||(29616017-29616062)
chr5 (15-53)||(30644587-30644625)
chr5 (17-54)||(4938575-4938612)
chr5 (17-49)||(3455315-3455347)
chr5 (17-49)||(25670360-25670392)
[»] chr3 (13 HSPs)
chr3 (15-215)||(38571525-38571731)
chr3 (15-53)||(43475907-43475945)
chr3 (15-52)||(55027251-55027288)
chr3 (77-175)||(35539982-35540080)
chr3 (15-48)||(7008604-7008637)
chr3 (17-62)||(42564441-42564486)
chr3 (17-53)||(4873708-4873744)
chr3 (17-49)||(6833109-6833141)
chr3 (17-49)||(12975320-12975352)
chr3 (17-53)||(33187650-33187686)
chr3 (17-49)||(36178027-36178059)
chr3 (17-49)||(48886377-48886409)
chr3 (17-49)||(51999617-51999649)
[»] chr6 (2 HSPs)
chr6 (15-208)||(8222600-8222787)
chr6 (15-53)||(30446751-30446789)
[»] chr4 (9 HSPs)
chr4 (15-54)||(28901603-28901642)
chr4 (15-52)||(48506140-48506177)
chr4 (15-52)||(56054736-56054773)
chr4 (15-53)||(23539216-23539254)
chr4 (77-135)||(28447780-28447838)
chr4 (15-53)||(31336081-31336119)
chr4 (17-53)||(33077409-33077445)
chr4 (17-49)||(33609449-33609481)
chr4 (17-49)||(48403455-48403487)
[»] chr1 (6 HSPs)
chr1 (15-54)||(36231410-36231449)
chr1 (15-53)||(10265515-10265553)
chr1 (15-54)||(43739517-43739556)
chr1 (15-49)||(51523747-51523781)
chr1 (77-135)||(51523816-51523874)
chr1 (17-53)||(47297137-47297173)
[»] chr2 (5 HSPs)
chr2 (15-52)||(9118314-9118351)
chr2 (17-54)||(13151155-13151192)
chr2 (15-49)||(6363869-6363903)
chr2 (108-190)||(6363969-6364051)
chr2 (15-52)||(1072607-1072644)
[»] chr7 (5 HSPs)
chr7 (15-53)||(30567100-30567138)
chr7 (15-49)||(115170-115204)
chr7 (15-53)||(33078347-33078385)
chr7 (101-150)||(28317518-28317567)
chr7 (17-49)||(39770215-39770247)
[»] scaffold1183 (1 HSPs)
scaffold1183 (17-49)||(141-173)
[»] scaffold0021 (1 HSPs)
scaffold0021 (17-49)||(109772-109804)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 7511340 - 7511140
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacgtgtcatgtctttatatgttcctctttctctctccgcgtgcacaattcccacatgcgccct 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||   ||||||||||||||||||||||| || |||||||| | |||||    
T  7511340 aatattaagatgataaaaatccaagtagccaatcgaaacgtgtcctgtctttatccattcctctttctctctccgcgtgcgcagttcccacacgtgccct 7511241  T
Q  115 gtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccaggatagagttcaactagtttaatggattcatcacctct 214  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  7511240 gtcggcgcgtgcatctcacgcaccatttttgcccaaccgatttgcgccacgtggcctgaccgggatatagttcaactagtttaatggattcatcacctct 7511141  T
Q  215 t 215  Q
    |    
T  7511140 t 7511140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 13497756 - 13497892
Alignment:
Q  13 agaatattaagatgataaaaatccaagcagccaatcgaa-------acgtgtcatgtctttatatgttcctctttctctctccgcgtgcacaattcccac 105  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||| |  ||||||   || |||||||||||||||||||||||| |||| |    
T  13497756 agaatattaagatgataaaaatccaagcagccaatcgaaacgcgccacgtgtcctacctttatcaatttctctttctctctccgcgtgcacaactccc-c 13497854  T
Q  106 atgcgccctgtcggcgcgtgcatctcacgcgccatttt 143  Q
    | | |||||||||  |||||||||||||||||||||||    
T  13497855 acgtgccctgtcgatgcgtgcatctcacgcgccatttt 13497892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 31129034 - 31129002
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||||||||||||||||||||||||||||    
T  31129034 tattaagatgataaaaatccaagcagccaatcg 31129002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 12272042 - 12272005
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  12272042 aatattaagatgataaaaatccaagcagtcaattgaaa 12272005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15057078 - 15057114
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  15057078 tattaagaagataaaaatccaagcagccaatcaaaac 15057114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 44503760 - 44503792
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  44503760 tattaagaagataaaaatccaagcagccaatcg 44503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 27405770 - 27405564
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg-------tgtcatgtctttatatgttcctctttctctctccgcgtgcacaattcccacat 107  Q
    |||||||||||||||||||||||||||||||| ||||||        |||| |||||||||   || |||||||||||||||||| ||||| | || ||     
T  27405770 aatattaagatgataaaaatccaagcagccaaacgaaactcgccacatgtcctgtctttatccatttctctttctctctccgcgttcacaacttccccac 27405671  T
Q  108 gcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccaggatagagttcaactagtttaatggattcat 207  Q
    || |||||||||||||||||||||||||||||||||   |||| ||||||||||||| ||||||| || ||| |||||||||||  ||||||| ||||||    
T  27405670 gcaccctgtcggcgcgtgcatctcacgcgccattttgagccaaccgttttgcgccacgtggcctg-ccgggacagagttcaacttatttaatgcattcat 27405572  T
Q  208 cacctctt 215  Q
    ||||||||    
T  27405571 cacctctt 27405564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 30644551 - 30644417
Alignment:
Q  80 tctctctccgcgtgcacaattcccacatgcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccagga 179  Q
    ||||||||||||||||||| | || || ||||||| ||| ||||||||||||||||||||||||   | || ||  ||||||||| |||||||| | |||    
T  30644551 tctctctccgcgtgcacaacttccccacgcgccctctcgacgcgtgcatctcacgcgccattttgaacgaaccggattgcgccacgtggcctga-cggga 30644453  T
Q  180 tagagttcaactagtttaatggattcatcacctctt 215  Q
     ||||||||||  |||||||| ||||||||||||||    
T  30644452 gagagttcaacatgtttaatgcattcatcacctctt 30644417  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 9958243 - 9958306
Alignment:
Q  75 ctctttctctctccgcgtgca-caattcccacatgcgccctgtcggcgcgtgcatctcacgcgcca 139  Q
    ||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||| |||||||||    
T  9958243 ctctttctctctccgcgtgcagcaactcccac--gcgccctgtcggcgcgtgcatcacacgcgcca 9958306  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 36571979 - 36571941
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36571979 aatattaagatgataaaaatccaagcagccaatcgaaac 36571941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 29616062 - 29616017
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaacgtgtcatgt 62  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  29616062 tattaagaagataaaaatccaagcagccaatcaaaacatgtcatgt 29616017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 30644625 - 30644587
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  30644625 aatattaagatgataaaaattcaaccagccaatcgaaac 30644587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 4938575 - 4938612
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaacg 54  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  4938575 tattaagatgataaaaatttaagcagccaatcgaaacg 4938612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 3455315 - 3455347
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  3455315 tattaagaagataaaaatccaagcagccaatcg 3455347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 25670392 - 25670360
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  25670392 tattaagaagataaaaatccaagcagccaatcg 25670360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 38571731 - 38571525
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg-------tgtcatgtctttatatgttcctctttctctctccgcgtgcacaattcccacat 107  Q
    |||||||||||||||||||||||||||||||| |||||||       ||||||| ||||||   || |||||||||||||||||||||||| |  | ||     
T  38571731 aatattaagatgataaaaatccaagcagccaaacgaaacgcgccacgtgtcatgcctttatccatttctctttctctctccgcgtgcacaactttcccac 38571632  T
Q  108 gcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccaggatagagttcaactagtttaatggattcat 207  Q
    ||||||||||||||||||||||||||||||||||||   | || |   ||||||||| ||||||| | | || ||||||||||  |||||||| ||||||    
T  38571631 gcgccctgtcggcgcgtgcatctcacgcgccattttgaacgaaccagattgcgccacgtggcctggcga-gacagagttcaacatgtttaatgaattcat 38571533  T
Q  208 cacctctt 215  Q
    ||||||||    
T  38571532 cacctctt 38571525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 43475907 - 43475945
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43475907 aatattaagatgataaaaatccaagcagccaatcgaaac 43475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 55027251 - 55027288
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55027251 aatattaagatgataaaaatccaagcagccaatcgaaa 55027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 35540080 - 35539982
Alignment:
Q  77 ctttctctctccgcgtgcacaattcccacatgcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgacc 175  Q
    |||||||||||||||| | |||  | |||| ||||||| |||||| |||||||||||||||||  |||||||||  ||   ||||||| ||||||||||    
T  35540080 ctttctctctccgcgttcccaacactcacacgcgccctatcggcgagtgcatctcacgcgccagctttgcccaactgtaacgcgccacgtggcctgacc 35539982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 7008604 - 7008637
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  7008604 aatattaagatgataaaaatccaagcagccaatc 7008637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 42564441 - 42564486
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaacgtgtcatgt 62  Q
    |||||||| ||||||||||||||||||||||| |||| || |||||    
T  42564441 tattaagaagataaaaatccaagcagccaatcaaaacatgccatgt 42564486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4873744 - 4873708
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  4873744 tattaagaagataaaaatccaagcagccaatcaaaac 4873708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 6833109 - 6833141
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  6833109 tattaagaagataaaaatccaagcagccaatcg 6833141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 12975320 - 12975352
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  12975320 tattaagaagataaaaatccaagcagccaatcg 12975352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 33187686 - 33187650
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  33187686 tattaagaagataaaaatccaagcagccaatcaaaac 33187650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 36178059 - 36178027
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  36178059 tattaagaagataaaaatccaagcagccaatcg 36178027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 48886409 - 48886377
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  48886409 tattaagaagataaaaatccaagcagccaatcg 48886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 51999649 - 51999617
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  51999649 tattaagaagataaaaatccaagcagccaatcg 51999617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 8222600 - 8222787
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg-------tgtcatgtctttatatgttcctctttctctctccgcgtgcacaattcccacat 107  Q
    |||||||||||||||||||| ||||||||||||||||||        |||| | |||||||   || ||||||||||||||||||||||| ||||||       
T  8222600 aatattaagatgataaaaattcaagcagccaatcgaaacacgccacatgtcctatctttatccatttctctttctctctccgcgtgcacagttcccag-- 8222697  T
Q  108 gcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccaggatagagttcaactagtttaatggattcat 207  Q
              |||||||||||||||||||||||||| |||||| || |||||||||| |||||||| || || ||  |||||||||||||||||||||||    
T  8222698 ----------ggcgcgtgcatctcacgcgccattttcgcccaaccgctttgcgccacgtggcctgatca-gagagtcttcaactagtttaatggattcat 8222786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30446751 - 30446789
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  30446751 aatattaagatgataaaaattcaagcagccaatcgaaac 30446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 28901603 - 28901642
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28901603 aatattaagatgataaaaatccaagcagccaatcgaaacg 28901642  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 48506177 - 48506140
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48506177 aatattaagatgataaaaatccaagcagccaatcgaaa 48506140  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 56054736 - 56054773
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  56054736 aatattaagatgataaaaatccaagcagccaatcgaaa 56054773  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 23539254 - 23539216
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  23539254 aatattaagatgataaaaatctaagcagccaattgaaac 23539216  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 28447780 - 28447838
Alignment:
Q  77 ctttctctctccgcgtgcacaattcccacatgcgccctgtcggcgcgtgcatctcacgc 135  Q
    ||||||||||| |||||||||    |||||  |||||||||||||||||||||||||||    
T  28447780 ctttctctctctgcgtgcacaggctccacacacgccctgtcggcgcgtgcatctcacgc 28447838  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 31336119 - 31336081
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  31336119 aatattaaaatgataaaaattcaagcagccaatcgaaac 31336081  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 33077445 - 33077409
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  33077445 tattaagaagataaaaatccaagcagccaatcaaaac 33077409  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33609449 - 33609481
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  33609449 tattaagaagataaaaatccaagcagccaatcg 33609481  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 48403487 - 48403455
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  48403487 tattaagaagataaaaatccaagcagccaatcg 48403455  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 36231410 - 36231449
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36231410 aatattaagatgataaaaatccaagcagccaatcgaaacg 36231449  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 10265553 - 10265515
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10265553 aatattaagatgataaaaatccaagcagccaatcgaaac 10265515  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 43739517 - 43739556
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaacg 54  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43739517 aatattaagatgataaaaattcaagcagccaatcgaaacg 43739556  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 51523747 - 51523781
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcg 49  Q
    ||||||||||||||||||||| |||||||||||||    
T  51523747 aatattaagatgataaaaatcgaagcagccaatcg 51523781  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 51523816 - 51523874
Alignment:
Q  77 ctttctctctccgcgtgcacaattcccacatgcgccctgtcggcgcgtgcatctcacgc 135  Q
    |||||||||||||||||||||    ||||| ||||||| ||||||| ||||||||||||    
T  51523816 ctttctctctccgcgtgcacaggctccacacgcgccctctcggcgcatgcatctcacgc 51523874  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 47297173 - 47297137
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  47297173 tattaagaagataaaaatccaagcagccaatcaaaac 47297137  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9118314 - 9118351
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9118314 aatattaagatgataaaaatccaagcagccaatcgaaa 9118351  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13151192 - 13151155
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcgaaacg 54  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13151192 tattaagatgataaaaatctaagcagccaatcgaaacg 13151155  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 6363869 - 6363903
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcg 49  Q
    ||||||||||||||||||||| |||||||||||||    
T  6363869 aatattaagatgataaaaatcgaagcagccaatcg 6363903  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 6363969 - 6364051
Alignment:
Q  108 gcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaatcgttttgcgccacatggcctgaccaggatagagttcaac 190  Q
    ||||||||||||||||||||||||| |||| |  |||||| || | |  |||||||| ||||||||||  || ||||||||||    
T  6363969 gcgccctgtcggcgcgtgcatctcatgcgctagctttgccaaaccataatgcgccacgtggcctgaccgagacagagttcaac 6364051  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1072644 - 1072607
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaa 52  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  1072644 aatattaagatgataaaaatccaagcagtcaatggaaa 1072607  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30567100 - 30567138
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  30567100 aatattaagatgataaaaatccaaacagccaatcgaaac 30567138  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 115170 - 115204
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcg 49  Q
    ||||||||||||||||||||| |||||||||||||    
T  115170 aatattaagatgataaaaatcgaagcagccaatcg 115204  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 33078385 - 33078347
Alignment:
Q  15 aatattaagatgataaaaatccaagcagccaatcgaaac 53  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  33078385 aatattaagatgataaaaattcaagcagtcaatcgaaac 33078347  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 28317567 - 28317518
Alignment:
Q  101 cccacatgcgccctgtcggcgcgtgcatctcacgcgccatttttgcccaa 150  Q
    |||||| |||||||||||||||||| | | ||||||||||||||| ||||    
T  28317567 cccacacgcgccctgtcggcgcgtgtaacgcacgcgccatttttggccaa 28317518  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 39770215 - 39770247
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  39770215 tattaagaagataaaaatccaagcagccaatcg 39770247  T

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Target: scaffold1183 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1183
Description:

Target: scaffold1183; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 141 - 173
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    ||||||||||||||||||||||| |||||||||    
T  141 tattaagatgataaaaatccaagaagccaatcg 173  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 109804 - 109772
Alignment:
Q  17 tattaagatgataaaaatccaagcagccaatcg 49  Q
    |||||||| ||||||||||||||||||||||||    
T  109804 tattaagaagataaaaatccaagcagccaatcg 109772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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