View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15194_low_12 (Length: 224)

Name: NF15194_low_12
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15194_low_12
NF15194_low_12
[»] chr4 (18 HSPs)
chr4 (80-200)||(1550650-1550770)
chr4 (14-84)||(5272920-5272990)
chr4 (14-79)||(22048416-22048481)
chr4 (14-79)||(4838498-4838563)
chr4 (14-77)||(44428753-44428817)
chr4 (14-80)||(19730881-19730947)
chr4 (14-71)||(33239651-33239708)
chr4 (14-79)||(324173-324239)
chr4 (14-71)||(21668274-21668331)
chr4 (14-71)||(21677038-21677095)
chr4 (14-71)||(35416066-35416123)
chr4 (14-79)||(40994909-40994974)
chr4 (14-71)||(55327506-55327563)
chr4 (23-71)||(26373001-26373049)
chr4 (23-71)||(52619246-52619294)
chr4 (139-181)||(1554365-1554407)
chr4 (14-56)||(26070462-26070504)
chr4 (23-56)||(1188708-1188741)
[»] scaffold0159 (1 HSPs)
scaffold0159 (14-80)||(28260-28326)
[»] scaffold0298 (2 HSPs)
scaffold0298 (14-79)||(11566-11631)
scaffold0298 (14-79)||(15336-15401)
[»] scaffold0015 (1 HSPs)
scaffold0015 (14-79)||(175336-175401)
[»] chr8 (13 HSPs)
chr8 (14-79)||(8742645-8742710)
chr8 (14-79)||(9067529-9067594)
chr8 (14-79)||(11308349-11308414)
chr8 (14-79)||(41576693-41576758)
chr8 (14-80)||(3299536-3299602)
chr8 (14-79)||(27348761-27348826)
chr8 (16-79)||(16583113-16583177)
chr8 (14-79)||(22181311-22181376)
chr8 (18-79)||(28370832-28370894)
chr8 (14-71)||(28925512-28925570)
chr8 (14-80)||(34006134-34006200)
chr8 (14-59)||(16959286-16959331)
chr8 (14-71)||(13848697-13848754)
[»] chr7 (18 HSPs)
chr7 (14-79)||(8107250-8107315)
chr7 (14-79)||(10345668-10345733)
chr7 (14-77)||(23795828-23795891)
chr7 (14-79)||(6173250-6173315)
chr7 (14-79)||(22321162-22321228)
chr7 (14-79)||(31157637-31157703)
chr7 (14-79)||(2632131-2632196)
chr7 (14-84)||(19471591-19471661)
chr7 (18-83)||(22825347-22825412)
chr7 (14-71)||(2478395-2478452)
chr7 (14-71)||(12089829-12089886)
chr7 (14-71)||(31879333-31879390)
chr7 (23-59)||(2796945-2796981)
chr7 (23-71)||(31663882-31663930)
chr7 (14-71)||(12184594-12184652)
chr7 (29-69)||(3544250-3544290)
chr7 (23-55)||(4704776-4704808)
chr7 (24-71)||(12191586-12191634)
[»] chr5 (15 HSPs)
chr5 (14-79)||(9405159-9405224)
chr5 (14-79)||(11722638-11722703)
chr5 (14-79)||(30606438-30606503)
chr5 (16-79)||(33435339-33435402)
chr5 (14-77)||(34457030-34457093)
chr5 (18-80)||(31846685-31846747)
chr5 (14-79)||(7315939-7316004)
chr5 (14-79)||(14345195-14345260)
chr5 (14-79)||(16903971-16904036)
chr5 (18-79)||(24836461-24836522)
chr5 (14-79)||(11767489-11767555)
chr5 (14-71)||(27166468-27166525)
chr5 (23-79)||(42801049-42801105)
chr5 (25-71)||(6270636-6270682)
chr5 (23-71)||(34869114-34869162)
[»] chr3 (17 HSPs)
chr3 (14-79)||(9990130-9990195)
chr3 (16-80)||(52307446-52307510)
chr3 (14-79)||(7652584-7652649)
chr3 (14-79)||(8626358-8626424)
chr3 (14-79)||(10385431-10385497)
chr3 (14-79)||(23383039-23383105)
chr3 (14-79)||(23397030-23397096)
chr3 (14-79)||(22098715-22098780)
chr3 (23-79)||(20962620-20962676)
chr3 (15-79)||(27849913-27849977)
chr3 (23-81)||(11257845-11257903)
chr3 (14-80)||(37023425-37023491)
chr3 (14-71)||(36468806-36468863)
chr3 (23-80)||(2357903-2357960)
chr3 (14-71)||(48167561-48167618)
chr3 (14-71)||(33248724-33248781)
chr3 (14-56)||(4742387-4742429)
[»] chr1 (13 HSPs)
chr1 (14-79)||(9667058-9667123)
chr1 (14-79)||(39000543-39000608)
chr1 (14-79)||(431702-431768)
chr1 (14-79)||(12167578-12167643)
chr1 (14-79)||(33491560-33491625)
chr1 (14-79)||(38121294-38121359)
chr1 (18-79)||(49249802-49249864)
chr1 (14-79)||(16832145-16832210)
chr1 (14-71)||(40999474-40999531)
chr1 (25-80)||(11738159-11738214)
chr1 (23-71)||(16131245-16131293)
chr1 (14-81)||(13217408-13217475)
chr1 (23-68)||(20225735-20225780)
[»] chr6 (12 HSPs)
chr6 (14-79)||(8667666-8667731)
chr6 (16-79)||(3539784-3539848)
chr6 (14-79)||(5670638-5670704)
chr6 (14-79)||(9932166-9932232)
chr6 (16-79)||(16698646-16698709)
chr6 (16-79)||(26514789-26514853)
chr6 (26-83)||(14479848-14479905)
chr6 (14-71)||(32806133-32806190)
chr6 (14-71)||(21595898-21595955)
chr6 (23-71)||(24160624-24160672)
chr6 (14-85)||(25055913-25055984)
chr6 (23-71)||(6778299-6778347)
[»] scaffold0076 (1 HSPs)
scaffold0076 (14-80)||(25010-25077)
[»] scaffold0336 (1 HSPs)
scaffold0336 (14-79)||(9477-9543)
[»] scaffold0124 (1 HSPs)
scaffold0124 (14-79)||(12929-12995)
[»] scaffold0019 (2 HSPs)
scaffold0019 (14-79)||(168770-168835)
scaffold0019 (14-56)||(115953-115995)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-79)||(349968-350033)
[»] scaffold0444 (1 HSPs)
scaffold0444 (14-77)||(11850-11914)
[»] chr2 (16 HSPs)
chr2 (14-79)||(29224449-29224515)
chr2 (14-79)||(29337748-29337814)
chr2 (16-79)||(36039624-36039687)
chr2 (14-71)||(8679165-8679222)
chr2 (14-79)||(42700336-42700401)
chr2 (14-71)||(31759013-31759070)
chr2 (23-80)||(43992256-43992313)
chr2 (23-71)||(28006828-28006876)
chr2 (16-71)||(13229712-13229767)
chr2 (14-71)||(36556932-36556989)
chr2 (14-70)||(14701379-14701435)
chr2 (14-70)||(28457248-28457304)
chr2 (14-59)||(9783654-9783699)
chr2 (30-71)||(27258135-27258176)
chr2 (23-59)||(23924414-23924450)
chr2 (23-71)||(24662497-24662545)
[»] scaffold0147 (1 HSPs)
scaffold0147 (17-79)||(7469-7530)
[»] scaffold0014 (1 HSPs)
scaffold0014 (16-71)||(75675-75730)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 1550650 - 1550770
Alignment:
Q  80 tttatgcacttcaaactctttatattatgcaagtttgcacatgatagaacagagaatacattatgacaattcccttatttgaatcaattagttgaattct 179  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  1550650 tttacgcacttcatactctttatattatgcaagtttgcacatgatagaacggagaatacattatgacaattctcttatttgaagcaattagttgaattct 1550749  T
Q  180 ctctcgcaacaaaagttctat 200  Q
    |||||||||||||||||||||    
T  1550750 ctctcgcaacaaaagttctat 1550770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 5272990 - 5272920
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcatttat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5272990 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcaattat 5272920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22048416 - 22048481
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22048416 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 22048481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 4838563 - 4838498
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4838563 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatctttcatca 4838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 44428817 - 44428753
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 77  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44428817 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 44428753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 19730947 - 19730881
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  19730947 cctgtggacacgatcctattatacttacatgtgaaaagttttatgagaggtaaaaatccttcatcat 19730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 33239651 - 33239708
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33239651 cctgtggacacgatcctattatacttacgtgtaaatagtttaatgagaggtaaaaatc 33239708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 324173 - 324239
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  324173 cctgtggacacgatcctatatatactcatgtgtaaatagttttatgagaggtaaaaatccttcatca 324239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 21668331 - 21668274
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  21668331 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 21668274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 21677095 - 21677038
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  21677095 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 21677038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 35416123 - 35416066
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  35416123 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 35416066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 40994974 - 40994909
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||| || |||||| |||||||||||||||||||||||||||||| | |||||||| || |||||    
T  40994974 cctgtagaaacgatcttattatacttacgtgtaaatagttttatgacatgtaaaaatactacatca 40994909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 55327506 - 55327563
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||| | |||||||||    
T  55327506 cctgcggaaacgatcatattatacttacgtgtaaatagttttatgatatgtaaaaatc 55327563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 26373049 - 26373001
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||    
T  26373049 acgatcctatcatacttacgtgtaaatagttttatgaaatgtaaaaatc 26373001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 52619246 - 52619294
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||| |||||||||||||||||||||||||||| | |||||||||    
T  52619246 acgatcctgttatacttacgtgtaaatagttttatgacatgtaaaaatc 52619294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 1554365 - 1554407
Alignment:
Q  139 attatgacaattcccttatttgaatcaattagttgaattctct 181  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  1554365 attatgacaattctcttatttgaagcaattagttgaattctct 1554407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 26070462 - 26070504
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagtttta 56  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  26070462 cctgcggaaacgatcctattatactcacgtgtaaatagtttta 26070504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 1188708 - 1188741
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagtttta 56  Q
    |||||||||||||||| |||||||||||||||||    
T  1188708 acgatcctattatactaacgtgtaaatagtttta 1188741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 28326 - 28260
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 28260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11631 - 11566
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11631 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 11566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 15401 - 15336
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15401 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 15336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 175336 - 175401
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  175336 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 175401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 8742710 - 8742645
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8742710 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 8742645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 9067594 - 9067529
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9067594 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 9067529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11308414 - 11308349
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308414 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 11308349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 41576758 - 41576693
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41576758 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 41576693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 3299536 - 3299602
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3299536 cctgtggacacgatcctattatacttatgtgtaaatagttttatgagaggtaaaaatccttcatcat 3299602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 27348761 - 27348826
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27348761 cctgtggacacgattctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 27348826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 16583113 - 16583177
Alignment:
Q  16 tgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16583113 tgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 16583177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22181311 - 22181376
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  22181311 cctgtggacacgatcctattatacttacgtgtgaatagttttatgagatggaaaaatccttcatca 22181376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 28370832 - 28370894
Alignment:
Q  18 tggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  28370832 tggacacgatcctatatatacttacatgtaaatagttttatgagaggtaaaaatccttcatca 28370894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 28925570 - 28925512
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28925570 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatc 28925512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 34006200 - 34006134
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||    
T  34006200 cctgtggacacgatcctattatacttacgtgcaaatagttttatgagatggaaaaaaccttcatcat 34006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 16959286 - 16959331
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatga 59  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  16959286 cctgcggaaacgatcctattatacttacgtgtaaatagttttatga 16959331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 13848754 - 13848697
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||||||||||||| || ||||||||||||||||| | |||||||||    
T  13848754 cctgcggaaacgatcctattatactcacttgtaaatagttttatgacatgtaaaaatc 13848697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 8107315 - 8107250
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8107315 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 8107250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 10345733 - 10345668
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10345733 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 10345668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 23795828 - 23795891
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23795828 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 23795891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6173250 - 6173315
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6173250 cctgtggacacgatcctattatacttacatgtaaatagttttatgagaggtaaaaatccttcatca 6173315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 22321228 - 22321162
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22321228 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 22321162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 31157703 - 31157637
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31157703 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 31157637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 2632131 - 2632196
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  2632131 cctgtggacacgatcctattatactcacgtgtaaatagttttatgagaggtaaaaatcctttatca 2632196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 19471661 - 19471591
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcatttat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||    
T  19471661 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagatggaaaaatcattcatcagttat 19471591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22825347 - 22825412
Alignment:
Q  18 tggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcattta 83  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  22825347 tggacacgatcctattatactcacgtgtaaatagttttatgagatggaaaaatccttcatcattta 22825412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2478395 - 2478452
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  2478395 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 2478452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 12089886 - 12089829
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  12089886 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 12089829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 31879333 - 31879390
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  31879333 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 31879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 2796981 - 2796945
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatga 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  2796981 acgatcctattatacttacgtgtaaatagttttatga 2796945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 31663930 - 31663882
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  31663930 acgatcctattatacttacgtgtaaatggttttatgacatgtaaaaatc 31663882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 12184594 - 12184652
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||  ||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  12184594 cctgtggattcgatcctatatatactcacgtgtaaatagttttatgagatgtaaaaatc 12184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 3544290 - 3544250
Alignment:
Q  29 ctattatacttacgtgtaaatagttttatgagaggtaaaaa 69  Q
    ||||||||||||| ||||||||||||||||| | |||||||    
T  3544290 ctattatacttacttgtaaatagttttatgacatgtaaaaa 3544250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 4704808 - 4704776
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagtttt 55  Q
    ||||| |||||||||||||||||||||||||||    
T  4704808 acgattctattatacttacgtgtaaatagtttt 4704776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 12191586 - 12191634
Alignment:
Q  24 cgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||| |||||| |||||||||||||||||||||  |||||||||    
T  12191586 cgatcctatatatactcacgtgtaaatagttttatgagttgtaaaaatc 12191634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 9405159 - 9405224
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9405159 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 9405224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11722703 - 11722638
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11722703 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 11722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 30606503 - 30606438
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30606503 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 30606438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 33435339 - 33435402
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33435339 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 33435402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 34457030 - 34457093
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34457030 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 34457093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 31846685 - 31846747
Alignment:
Q  18 tggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31846685 tggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 31846747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 7315939 - 7316004
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7315939 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagagggaaaaatccttcatca 7316004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 14345195 - 14345260
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14345195 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaattcttcatca 14345260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 16904036 - 16903971
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16904036 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatctttcatca 16903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 24836461 - 24836522
Alignment:
Q  18 tggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836461 tggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 24836522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 11767489 - 11767555
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11767489 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 11767555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27166525 - 27166468
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  27166525 cctgcggaaacgatcctattatactgacgtgtaaatagttttatgagatgtaaaaatc 27166468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 42801049 - 42801105
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||||| |||||    
T  42801049 acgatcctattatagtcacgtgtaaatagttttatgacatgtaaaaatcctacatca 42801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 6270636 - 6270682
Alignment:
Q  25 gatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||||||||| |||||||||||||||||||| | |||||||||    
T  6270636 gatcctattatactcacgtgtaaatagttttatgacatgtaaaaatc 6270682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 34869162 - 34869114
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||||||||||| || ||||||||||||||||| | |||||||||    
T  34869162 acgatcctattatactcacatgtaaatagttttatgacatgtaaaaatc 34869114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 9990130 - 9990195
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9990130 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 9990195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 52307510 - 52307446
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52307510 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 52307446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 7652649 - 7652584
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7652649 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatcctttatca 7652584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8626358 - 8626424
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8626358 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 8626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 10385497 - 10385431
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10385497 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 10385431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 23383039 - 23383105
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23383039 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 23383105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 23397030 - 23397096
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  23397030 cctgtggatacgatcctatatatacttacgtgtaaatagttttataagaggtaaaaatccttcatca 23397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22098715 - 22098780
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||    
T  22098715 cctgtggacacgatcctattatactcacatgtaaatagttttatgagatggaaaaatccttcatca 22098780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 20962676 - 20962620
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  20962676 acgatcctattatacttacgtgtaaatagttttatgagatgtaaaaatcctacatca 20962620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 27849977 - 27849913
Alignment:
Q  15 ctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||    
T  27849977 ctgtggacacgatcctattatactcacatgtaaatagttttatgagatggaaaaatccttcatca 27849913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 11257903 - 11257845
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcatt 81  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  11257903 acgatcctattatacttatgtgtaaatagttttatgagatgtaaaaatcctacatcatt 11257845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 37023425 - 37023491
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  37023425 cctgtggactcgatcatattatacttacgtgtaaatagttttatgagatgtaaaaatcttacatcat 37023491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 36468863 - 36468806
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  36468863 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 36468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2357903 - 2357960
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  2357903 acgatcatattatacttacgtgtaaatagttttatgacatgtaaaaatcttacatcat 2357960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 48167618 - 48167561
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||| | |||||||||    
T  48167618 cctgtcgaaacgatcctattatacttacgtataaatagttttatgacatgtaaaaatc 48167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 33248724 - 33248781
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||||||||||| ||| |||||||||||||||||| | |||||||||    
T  33248724 cctgcggaaacgatcctattataattatgtgtaaatagttttatgacatgtaaaaatc 33248781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 4742429 - 4742387
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagtttta 56  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  4742429 cctgcggaaacgatcctattatactcacgtgtaaatagtttta 4742387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 9667123 - 9667058
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9667123 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 9667058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 39000608 - 39000543
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39000608 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 39000543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 431768 - 431702
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  431768 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 12167643 - 12167578
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  12167643 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtgaaaaaccttcatca 12167578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 33491625 - 33491560
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33491625 cctgtagacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatcctttatca 33491560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 38121359 - 38121294
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38121359 cctgtggacacgatcttattatacttacgtgtaaataattttatgagaggtaaaaatccttcatca 38121294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 49249802 - 49249864
Alignment:
Q  18 tggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49249802 tggacacgatcatatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 49249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 16832210 - 16832145
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||    
T  16832210 cctgcggaaacgatcctattatactcacgtgtaaatagttttatgagatgtaaaaaacctacatca 16832145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 40999531 - 40999474
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40999531 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 40999474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 11738214 - 11738159
Alignment:
Q  25 gatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  11738214 gatcctattatacttacgtgtaaatagttttatgacatgtaaaaatcttacatcat 11738159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 16131245 - 16131293
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  16131245 acgatcctattatacttacttgtaaatagttttatgacatgtaaaaatc 16131293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 13217475 - 13217408
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcatt 81  Q
    |||| ||| |||||||||||||||| ||||||||||| |||||||| | ||||||||| | |||||||    
T  13217475 cctgcggaaacgatcctattatactcacgtgtaaataattttatgacatgtaaaaatcttacatcatt 13217408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 20225780 - 20225735
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaa 68  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||    
T  20225780 acgatcctattatactttcgtgtaaatagttttatgacatgtaaaa 20225735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8667666 - 8667731
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8667666 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatctttcatca 8667731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 3539784 - 3539848
Alignment:
Q  16 tgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3539784 tgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 3539848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 5670704 - 5670638
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  5670704 cctgtggacacgatcctatatatactcacgtgtaaatagttttatgagaggtaaaaatcctacatca 5670638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 9932232 - 9932166
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||    
T  9932232 cctgtggacacgatcctatatatacttacgtgtaaagagttttatgagaggtaaaaatctttcatca 9932166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 16698646 - 16698709
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  16698646 tgtggacacaatcctattatactcacgtgtaaatagttttatgagatggaaaaatccttcatca 16698709  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26514853 - 26514789
Alignment:
Q  16 tgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26514853 tgtggacaagatcctatatatacttacgtgtaaatagttttatgagaggtaaatatctttcatca 26514789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 14479848 - 14479905
Alignment:
Q  26 atcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcattta 83  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||    
T  14479848 atcctattatacttacatgtaaatagttttatgagatgtaaaaatcttacatcattta 14479905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 32806190 - 32806133
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| | |||||||||    
T  32806190 cctgtggaaacgatcctatcatacttacgtgtaaatagttttatgacatgtaaaaatc 32806133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 21595955 - 21595898
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||| | |||||||||    
T  21595955 cctgcggaaacgatcctattatactcacgtgtaaatagttttatgacatgtaaaaatc 21595898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 24160672 - 24160624
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  24160672 acgatcctattatacttacatgttaatagttttatgacatgtaaaaatc 24160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 25055984 - 25055913
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcatttatg 85  Q
    |||| ||| |||||| |||||||||||||||||||||||||||  | | ||||||||| | |||||| ||||    
T  25055984 cctgcggaaacgatcttattatacttacgtgtaaatagttttaatacatgtaaaaatcttacatcatatatg 25055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6778299 - 6778347
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||| ||||||||| || ||||||||||||||||| | |||||||||    
T  6778299 acgatcatattatactcacatgtaaatagttttatgacatgtaaaaatc 6778347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 25077 - 25010
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25077 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 25010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 9477 - 9543
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9477 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 9543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 12929 - 12995
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12929 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 12995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 168835 - 168770
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  168835 cctgtggacacgatcctattatacttacgtgtaagtagttttatgagaagtaaaaatccttcatca 168770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 115995 - 115953
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagtttta 56  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  115995 cctgcggaaacgatcctattatactcacgtgtaaatagtttta 115953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 350033 - 349968
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  350033 cctgtggacacgatcctattatacttacgtgtaaatagttttgtgagaggtaaaaatcctttatca 349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 11914 - 11850
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 77  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11914 cctgtggacacgatcctatatatacttacgtgtaaatagttttatgagaggtaaaaatccttcat 11850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 29224449 - 29224515
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29224449 cctgtggacacgatcctatatatactcacgtgtaaatagttttatgagaggtaaaaatccttcatca 29224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 29337748 - 29337814
Alignment:
Q  14 cctgtggacacgatcctat-tatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29337748 cctgtggacacgatcctatatatactcacgtgtaaatagttttatgagaggtaaaaatccttcatca 29337814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 36039687 - 36039624
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  36039687 tgtgaacacgatcctattatacttacgtgtaaatagttttatgagatggaaaaatccttcatca 36039624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 8679222 - 8679165
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8679222 cctgtggaaacgatcctattatacttacgtgtaaatagttttatgagatgtaaaaatc 8679165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 42700401 - 42700336
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  42700401 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgagatgtaaaaatcctacatca 42700336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 31759013 - 31759070
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  31759013 cctgcggaaacgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 31759070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 43992256 - 43992313
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatcat 80  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  43992256 acgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatcatacatcat 43992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 28006828 - 28006876
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  28006828 acgatcctattatacttacgtgtaaatagttttatgacatgtaaaaatc 28006876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 13229767 - 13229712
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||| |||||| |||||||||||||||||||||||||||||| | |||||||||    
T  13229767 tgtggaaacgatcatattatacttacgtgtaaatagttttatgacatgtaaaaatc 13229712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 36556989 - 36556932
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||| | |||||||||    
T  36556989 cctgcggaaacgatcatattatacttacgtgtaaatagttttatgacatgtaaaaatc 36556932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 14701379 - 14701435
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaat 70  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  14701379 cctgcggaaacgatccaattatacttacgtgtaaatagttttatgacatgtaaaaat 14701435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 28457304 - 28457248
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaat 70  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  28457304 cctgcggaaacgatcatattatacttacgtgtaaatagttttatgacatgtaaaaat 28457248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9783699 - 9783654
Alignment:
Q  14 cctgtggacacgatcctattatacttacgtgtaaatagttttatga 59  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||    
T  9783699 cctgcggaaacgatcctattatacttacgtgtaaagagttttatga 9783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 27258135 - 27258176
Alignment:
Q  30 tattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  27258135 tattatacttacgtgtaaatagttttatgacatgtaaaaatc 27258176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 23924450 - 23924414
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatga 59  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23924450 acgatcctattatactcacgtgtaaatagttttatga 23924414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 24662545 - 24662497
Alignment:
Q  23 acgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    |||||||||||||||| |||||||||||||| ||||| | |||||||||    
T  24662545 acgatcctattatactcacgtgtaaatagttatatgacatgtaaaaatc 24662497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 7469 - 7530
Alignment:
Q  17 gtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatccttcatca 79  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7469 gtggacac-atcctattatactcacgtgtaaatagttttatgagaggtaaaaatccttcatca 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 75730 - 75675
Alignment:
Q  16 tgtggacacgatcctattatacttacgtgtaaatagttttatgagaggtaaaaatc 71  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  75730 tgtggacacgatcctattatactcacgtgtaaatagttttatgacatgtaaaaatc 75675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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