View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15194_low_2 (Length: 619)

Name: NF15194_low_2
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15194_low_2
NF15194_low_2
[»] chr2 (25 HSPs)
chr2 (8-292)||(409093-409377)
chr2 (294-474)||(409933-410113)
chr2 (301-428)||(44068774-44068902)
chr2 (531-605)||(410170-410244)
chr2 (294-426)||(30549093-30549226)
chr2 (292-426)||(25626505-25626640)
chr2 (294-431)||(14275789-14275927)
chr2 (294-431)||(32294499-32294637)
chr2 (294-420)||(39420193-39420320)
chr2 (292-426)||(29877009-29877144)
chr2 (294-420)||(20061055-20061182)
chr2 (292-428)||(7061556-7061692)
chr2 (292-432)||(7743713-7743854)
chr2 (108-171)||(975586-975649)
chr2 (304-430)||(15079872-15079999)
chr2 (335-430)||(39364497-39364593)
chr2 (365-431)||(36278289-36278356)
chr2 (301-426)||(9950310-9950436)
chr2 (379-429)||(37775598-37775648)
chr2 (93-146)||(820473-820526)
chr2 (541-590)||(1403188-1403237)
chr2 (381-434)||(21620630-21620683)
chr2 (253-293)||(404191-404231)
chr2 (315-426)||(36528402-36528514)
chr2 (301-376)||(41890030-41890106)
[»] chr8 (14 HSPs)
chr8 (294-431)||(15067606-15067744)
chr8 (295-432)||(8114292-8114430)
chr8 (343-430)||(13949029-13949117)
chr8 (323-432)||(6530369-6530479)
chr8 (301-426)||(42685750-42685876)
chr8 (301-402)||(31313348-31313450)
chr8 (292-427)||(8867214-8867349)
chr8 (294-424)||(8768995-8769125)
chr8 (381-428)||(10815654-10815701)
chr8 (295-399)||(7774631-7774736)
chr8 (295-399)||(7791278-7791383)
chr8 (295-399)||(7811862-7811967)
chr8 (393-434)||(11258000-11258041)
chr8 (393-429)||(38869903-38869939)
[»] chr1 (15 HSPs)
chr1 (301-403)||(11017959-11018062)
chr1 (295-429)||(41884610-41884745)
chr1 (301-427)||(4084739-4084866)
chr1 (294-430)||(16394859-16394996)
chr1 (292-430)||(36012406-36012545)
chr1 (294-399)||(1035602-1035708)
chr1 (313-421)||(16583208-16583317)
chr1 (301-420)||(31635482-31635602)
chr1 (301-427)||(28490492-28490618)
chr1 (408-442)||(21008132-21008166)
chr1 (295-439)||(31262593-31262739)
chr1 (361-434)||(5799725-5799798)
chr1 (382-434)||(8547425-8547477)
chr1 (382-434)||(8612664-8612716)
chr1 (380-432)||(30058478-30058530)
[»] chr7 (14 HSPs)
chr7 (294-429)||(32786824-32786960)
chr7 (295-430)||(28337239-28337375)
chr7 (295-430)||(32546742-32546877)
chr7 (301-431)||(47990932-47991063)
chr7 (336-431)||(25119814-25119911)
chr7 (333-432)||(26080961-26081061)
chr7 (333-432)||(26104748-26104848)
chr7 (301-428)||(39837393-39837521)
chr7 (365-434)||(7907559-7907627)
chr7 (382-442)||(48633884-48633944)
chr7 (365-432)||(45837914-45837981)
chr7 (92-150)||(12094139-12094197)
chr7 (92-157)||(1446662-1446727)
chr7 (393-437)||(25005460-25005504)
[»] chr3 (18 HSPs)
chr3 (292-430)||(39430292-39430431)
chr3 (301-424)||(47006637-47006761)
chr3 (295-429)||(4539891-4540026)
chr3 (294-429)||(26040851-26040985)
chr3 (307-429)||(33791526-33791649)
chr3 (361-428)||(45628413-45628480)
chr3 (361-434)||(54787785-54787858)
chr3 (301-420)||(19961175-19961294)
chr3 (301-432)||(47069207-47069337)
chr3 (31-78)||(45811364-45811411)
chr3 (392-430)||(24355447-24355485)
chr3 (335-432)||(25101970-25102067)
chr3 (323-403)||(18030051-18030132)
chr3 (362-427)||(28787773-28787837)
chr3 (348-432)||(35306531-35306616)
chr3 (393-430)||(37387475-37387512)
chr3 (301-428)||(13637931-13638059)
chr3 (392-432)||(37238756-37238796)
[»] chr5 (8 HSPs)
chr5 (301-430)||(29557513-29557643)
chr5 (294-430)||(554278-554415)
chr5 (361-433)||(41063951-41064023)
chr5 (294-363)||(10523689-10523758)
chr5 (365-429)||(10197099-10197163)
chr5 (305-430)||(26105054-26105180)
chr5 (405-442)||(19521563-19521600)
chr5 (390-431)||(34178227-34178268)
[»] chr4 (17 HSPs)
chr4 (316-431)||(29508720-29508836)
chr4 (294-403)||(27918353-27918463)
chr4 (349-430)||(30033474-30033556)
chr4 (296-432)||(50297625-50297762)
chr4 (301-431)||(28675674-28675805)
chr4 (323-428)||(24940693-24940799)
chr4 (330-399)||(29818477-29818547)
chr4 (295-429)||(36989868-36990002)
chr4 (336-431)||(564100-564196)
chr4 (301-428)||(14139016-14139144)
chr4 (387-439)||(22019517-22019569)
chr4 (396-434)||(23880202-23880240)
chr4 (380-429)||(30666963-30667012)
chr4 (359-436)||(31690652-31690729)
chr4 (390-431)||(37861304-37861345)
chr4 (387-431)||(21894836-21894880)
chr4 (381-429)||(39414508-39414556)
[»] chr6 (5 HSPs)
chr6 (301-427)||(6469543-6469670)
chr6 (294-376)||(30249178-30249261)
chr6 (382-431)||(7509631-7509680)
chr6 (292-427)||(3787460-3787596)
chr6 (380-424)||(35033492-35033536)
[»] scaffold0542 (1 HSPs)
scaffold0542 (296-431)||(4551-4686)
[»] scaffold0037 (1 HSPs)
scaffold0037 (396-434)||(19292-19330)
[»] scaffold0482 (1 HSPs)
scaffold0482 (295-399)||(530-635)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 409093 - 409377
Alignment:
Q  8 gtctgagcacaacaagtagatggcggtagaaagaatcggaagtttaccagacgagttcctgattcacattcactctatgatgatcaccaaacaaaccttg 107  Q
    |||||||||||||| || |||||||||||| || || |||||||||||||||||| | ||||||||||||| |||| |  |   |||||||||| ||||     
T  409093 gtctgagcacaacatgtcgatggcggtagataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagccttt 409192  T
Q  108 gtcacgtccattctttcaaagagatggactcgtctatggtgttgtgttcccaatcttgacttcagtgacacgaaacttaaaaatcgtgaagacagttccc 207  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  409193 gtcacatccattctttcaaagagatggactcatctatggtgttttgttcccaatcttgacttcagtgacacgaaacttaaaaatggcgaagacagttccc 409292  T
Q  208 gcttcagcaactttgtcaacaccgtttttcactcgcaagattgctttggttctcatgccatcaacagtttcatcctcgacattga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  409293 gcttcagcaactttgtcaacaccgtttttcactcgcaagattgctttggttctcatgccatcaacagtttcatcctcgacattga 409377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 294 - 474
Target Start/End: Original strand, 409933 - 410113
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttcaatgcaaagttgcttattttaggttcct 393  Q
    ||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  409933 gaactcgttatagaaataaacttatcaaaagtcgtgcagtcaacttctcaaaagttaaattacgatgttttgaatgcaaagttgcttattttaggttcct 410032  T
Q  394 taacatgtgcgtttagggcacaagttaacatgacccttattattattatcaaatattatggtgcctgccaatggaatgaaa 474  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410033 taacatgtgcccttagggcacaagttaacatgacccttattattattatcaaatattatggtgcctgccaatggaatgaaa 410113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 44068902 - 44068774
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| | ||||||| |||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||| | ||||||| |||||||||||    
T  44068902 ttatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaattatcatgtttttcaatgcaaagttgttcattttagattccttaacat 44068803  T
Q  400 gtgcgtttagggcacaagttaacatgacc 428  Q
    ||||  |||||||||||||||||||||||    
T  44068802 gtgcccttagggcacaagttaacatgacc 44068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 531 - 605
Target Start/End: Original strand, 410170 - 410244
Alignment:
Q  531 gtatgatcagcctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410170 gtatgatcagcctaatgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagt 410244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 30549093 - 30549226
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatg-ttttcaatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| ||||||||| |||| |||||||||||||| ||| |||||||||| ||| |||| |||||||| ||||| |||||| |||||    
T  30549093 gaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaattatcatgttttttaatgcaaatttgctcattttaagttcc 30549192  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatga 426  Q
    ||||||||| | ||||| ||||||||||||||||    
T  30549193 ttaacatgttcctttagagcacaagttaacatga 30549226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 292 - 426
Target Start/End: Original strand, 25626505 - 25626640
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggtt 390  Q
    |||||||  |||| |||||| ||||||||| |||| || | ||||||||| |||||||||||||| |||||||| ||| |||||||| | ||||||||||    
T  25626505 aagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaattatcatgttttccaattcaaagttgttcattttaggtt 25626604  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatga 426  Q
    |||||||||||||  |||||||||||||||||||||    
T  25626605 ccttaacatgtgcccttagggcacaagttaacatga 25626640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 14275789 - 14275927
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| ||||||||| |||| |||| ||||||||| |||||||||  ||| ||||||| ||||||||| |||||  |||| |||| |    
T  14275789 gaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgttttccaatgcaaaattgctctttttgggttgc 14275888  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||| |||||| ||||||| |||||||| ||||||||||    
T  14275889 ttaatatgtgcctttagggaacaagttagcatgaccctt 14275927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 32294637 - 32294499
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| | |||| || |||| |||| ||||||||| |||||| ||| ||| |||||||| |||| ||| |||||  ||||||||||     
T  32294637 gaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaactattatgttttccaatgtaaatttgctctttttaggttct 32294538  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  32294537 ttaacatgtgcctttagggcacaagttagcatgaccctt 32294499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 39420320 - 39420193
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| || ||| ||  ||| |||| |||||||||  ||||||||| ||| |||||||| ||||||||||||||  |||||||||||    
T  39420320 gaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttttccaatgcaaagttgctctttttaggttcc 39420221  T
Q  393 ttaacatgtgcgtttagggcacaagtta 420  Q
    ||||||||||| || |||||||||||||    
T  39420220 ttaacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 292 - 426
Target Start/End: Complemental strand, 29877144 - 29877009
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgat-gttttcaatgcaaagttgcttattttaggtt 390  Q
    |||||||| ||||| ||||||| |||| || |||| |||| |||| ||||||||||||||||||| ||  ||||||||||||| ||||||||||||  ||    
T  29877144 aagaactcattataaaaataaatgtattaaaagtcgtgcagtcaatttctcaaaagttaaattataatatttttcaatgcaaaattgcttattttaaatt 29877045  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatga 426  Q
     |||||||||| |  ||||  |||||||||||||||    
T  29877044 tcttaacatgtacccttagaacacaagttaacatga 29877009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 20061182 - 20061055
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| ||||||||| |||  |||| ||||||||| ||||||| |  ||| ||||||| |||||||||||||||  ||||||||| |    
T  20061182 gaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgtttttcaatgcaaagttgctctttttaggttgc 20061083  T
Q  393 ttaacatgtgcgtttagggcacaagtta 420  Q
    |||||||||||  | |||| ||||||||    
T  20061082 ttaacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 428
Target Start/End: Original strand, 7061556 - 7061692
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgt-tttcaatgcaaagttgcttattttaggtt 390  Q
    |||||||  ||||||||||| | | ||||| |||| || ||| ||||||| |||||||||| ||| |||  |||||||| |||||||||| |||| ||||    
T  7061556 aagaacttattatagaaatatatgcatcaaaagtcgtgtaataaacttctaaaaagttaaaatatcatggatttcaatggaaagttgctt-ttttgggtt 7061654  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatgacc 428  Q
    ||||||||| |||  |||||||||| ||||||||||||    
T  7061655 ccttaacatatgccgttagggcacacgttaacatgacc 7061692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 7743854 - 7743713
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttcaa-tgcaaagttgcttattttaggtt 390  Q
    |||||||| ||||||||||| | | ||| | |||| |||| | ||||||| |||||||||||||  ||||||||   |||||||||||| ||||| ||||    
T  7743854 aagaactcattatagaaatatatgcatcgaaagtcgtgcagttaacttcttaaaagttaaattaccatgttttcccgtgcaaagttgctcattttgggtt 7743755  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
     |||||||| |||  ||| | ||||| |||||||||||||||    
T  7743754 tcttaacatatgcccttaagacacaaattaacatgaccctta 7743713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 975649 - 975586
Alignment:
Q  108 gtcacgtccattctttcaaagagatggactcgtctatggtgttgtgttcccaatcttgacttca 171  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||||    
T  975649 gtcacttccattctttcaaagcgatggactcatctttggtgttttgttcccgatcttgacttca 975586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 430
Target Start/End: Original strand, 15079872 - 15079999
Alignment:
Q  304 tagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtg 402  Q
    |||||||| || || ||| |||| |||| ||||||||| |||||||||| ||| || |||| ||||| ||| |||||  ||||||||| ||||||| |||    
T  15079872 tagaaatatacatagcaaaagtcgtgcattcaacttcttaaaagttaaactatcatatttttcaatgtaaaattgctctttttaggtttcttaacacgtg 15079971  T
Q  403 cgtttagggcacaagttaacatgaccct 430  Q
       ||||| |||||||||||||||||||    
T  15079972 tccttaggacacaagttaacatgaccct 15079999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 39364497 - 39364593
Alignment:
Q  335 aacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    ||||||| |||||||||| ||| |||||||| |||||||||||| |  |||| ||||| |||||| ||||  ||| |||| ||||||||||||||||    
T  39364497 aacttctaaaaagttaaaatattatgttttccaatgcaaagttgttatttttgggttcattaacacgtgcccttatggcataagttaacatgaccct 39364593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 36278356 - 36278289
Alignment:
Q  365 caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcac-aagttaacatgaccctt 431  Q
    |||| ||||||||||  |||||||||||||||||||||   ||||||||| |||||||||||||||||    
T  36278356 caatacaaagttgctctttttaggttccttaacatgtgttcttagggcacaaagttaacatgaccctt 36278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 9950310 - 9950436
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| |||||  || |||| |||| ||||||| | |||||||||| ||| ||||||| |||||||||||| ||  |||  ||||| |||||||    
T  9950310 ttatagaaatatacgtactaaaagtcgtgcagtcaacttttaaaaagttaaaatattatgttttccaatgcaaagttcctcttttcgggttctttaacat 9950409  T
Q  400 gtgcgtttagggcacaagttaacatga 426  Q
    ||||  ||||  ||||||||| |||||    
T  9950410 gtgcccttagaacacaagttagcatga 9950436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 37775648 - 37775598
Alignment:
Q  379 ttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    ||||||||| ||||||||||| | | ||||| |||||||||||||||||||    
T  37775648 ttattttagattccttaacatatacctttagagcacaagttaacatgaccc 37775598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 820473 - 820526
Alignment:
Q  93 accaaacaaaccttggtcacgtccattctttcaaagagatggactcgtctatgg 146  Q
    ||||||||| |||| ||||| ||||||||||||||| |||||| || |||||||    
T  820473 accaaacaagcctttgtcacttccattctttcaaagcgatggattcatctatgg 820526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 1403188 - 1403237
Alignment:
Q  541 cctaatgacttccctacattccataatttgatccatttggtgatcaacta 590  Q
    ||||||||||| |||||||||||||||||||  ||| ||||| |||||||    
T  1403188 cctaatgactttcctacattccataatttgactcatctggtgctcaacta 1403237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 21620683 - 21620630
Alignment:
Q  381 attttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||||| |||||||||| |||||  |||||||||||||||| ||||||| ||||    
T  21620683 attttaagttccttaacttgtgcccttagggcacaagttaagatgacccatatt 21620630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 404191 - 404231
Alignment:
Q  253 ttggttctcatgccatcaacagtttcatcctcgacattgaa 293  Q
    |||||| |||| |||||||||||||| ||||||||||||||    
T  404191 ttggttttcattccatcaacagtttcttcctcgacattgaa 404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 426
Target Start/End: Original strand, 36528402 - 36528514
Alignment:
Q  315 gtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggca 413  Q
    ||||||| |||| |||| ||||||||| ||||||| |  | | |||||||| ||||||||| ||||  ||||| ||| |||||||||| |  | ||| ||    
T  36528402 gtatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggaca 36528501  T
Q  414 caagttaacatga 426  Q
    |||||||||||||    
T  36528502 caagttaacatga 36528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 41890106 - 41890030
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagtt 376  Q
    ||||||||||| ||| ||||| |||| |||| ||||||||| |||| ||||| | | ||||||| ||||||||||||    
T  41890106 ttatagaaatatacgcatcaaaagtcgtgcattcaacttcttaaaaattaaaatgttatgttttccaatgcaaagtt 41890030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 15067606 - 15067744
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    |||||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15067606 gaactcgttatagaaataaacgtatcaaaagtcgtgcagtcaatttctcaaaagttaaattatgatgttttccaatgcaaagttgcttattttaggttcc 15067705  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  15067706 ttaacatgtgcctttacggcacaagttaacatgaccctt 15067744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 8114430 - 8114292
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||| ||||| | |||| || |||| |||| |||| || | |||| ||||||||| |||||||  |||||||| ||||| ||||||  |||||    
T  8114430 aactcattataaaaatatatgtattaaaagtcgtgcagtcaattttttaaaaattaaattatcatgttttttaatgcaaaattgctcattttaaattcct 8114331  T
Q  394 taacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8114330 taacatgtgcccttagggcacaagttaacatgaccctta 8114292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 13949029 - 13949117
Alignment:
Q  343 aaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||||||||||||| |||||||  |||  ||||||||| |||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  13949029 aaaagttaaattatcatgttttttaatataaagttgctcattttacgttccttaacatgtgcttttaggacacaagttaacatgaccct 13949117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 6530369 - 6530479
Alignment:
Q  323 agtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaa 421  Q
    |||| |||| ||||||||| |||||| ||  ||| |||||||| ||||||||||||||  |||| |||| |||||||||||   ||||| ||||||||||    
T  6530369 agtcgtgcattcaacttcttaaaagtcaatatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaa 6530468  T
Q  422 catgaccctta 432  Q
    |||||||||||    
T  6530469 catgaccctta 6530479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 42685750 - 42685876
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    |||||||||||   ||||||| |||| || | ||||||||| |||||||||| ||| ||||||| ||||||||| | |||| ||||   |||||||||||    
T  42685750 ttatagaaatatgtgtatcaaaagtcgtgtagtcaacttctaaaaagttaaaatattatgtttttcaatgcaaaatagctttttttgaattccttaacat 42685849  T
Q  400 gtgcgtttagggcacaagttaacatga 426  Q
    |||| ||||||  ||||||||||||||    
T  42685850 gtgcctttaggatacaagttaacatga 42685876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 31313348 - 31313450
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| ||||||||| |||| |||| ||||||| | ||||||| |  ||| ||||||| |||||||||||||||  |||||| || ||||||||    
T  31313348 ttatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatattatgttttccaatgcaaagttgctctttttagattgcttaacat 31313447  T
Q  400 gtg 402  Q
    |||    
T  31313448 gtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 8867214 - 8867349
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttag-gt 389  Q
    |||||||| ||||||||||| ||| ||||| |||  |||| ||||||||| |||| ||||| | | |||||||| |||| || ||| ||  |||||| ||    
T  8867214 aagaactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaaatgttatgttttctaatgtaatgttact--ttttagcgt 8867311  T
Q  390 tccttaacatgtgcgtttagggcacaagttaacatgac 427  Q
    || |||||||||||  ||||||||||||||| ||||||    
T  8867312 tctttaacatgtgccattagggcacaagttagcatgac 8867349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 8769125 - 8768995
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaag-ttaaattatgatgttttcaatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| | |||| || |||  |||| |||  |||| ||||| ||||| ||| || ||||||||  |||||||||  ||||||||| |    
T  8769125 gaactcattatagaaatatatgtataaaaagttgtgcattcatattcttaaaaggttaaaatatcatattttcaatataaagttgctc-ttttaggtttc 8769027  T
Q  393 ttaacatgtgcgtttagggcacaagttaacat 424  Q
    |||||||||||  ||||| |||||||||||||    
T  8769026 ttaacatgtgctcttaggacacaagttaacat 8768995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 10815701 - 10815654
Alignment:
Q  381 attttaggttccttaacatgtgcgtttagggcacaagttaacatgacc 428  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||||    
T  10815701 attttaggttccttaacatgtgccatgagggcacaaattaacatgacc 10815654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 7774631 - 7774736
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| | ||||||| |||| |||| ||||||||| |||  ||||| | | ||||||| ||||| ||| || || ||||||||||| |    
T  7774631 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctt 7774730  T
Q  394 taacat 399  Q
    ||||||    
T  7774731 taacat 7774736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 7791278 - 7791383
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| | ||||||| |||| |||| ||||||||| |||  ||||| | | ||||||| ||||| ||| || || ||||||||||| |    
T  7791278 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctt 7791377  T
Q  394 taacat 399  Q
    ||||||    
T  7791378 taacat 7791383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 7811862 - 7811967
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| | ||||||| |||| |||| ||||||||| |||  ||||| | | ||||||| ||||| ||| || || ||||||||||| |    
T  7811862 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctt 7811961  T
Q  394 taacat 399  Q
    ||||||    
T  7811962 taacat 7811967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 11258000 - 11258041
Alignment:
Q  393 ttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  11258000 ttaacatgtgccctaagggcacaagttaacatgacccttatt 11258041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 38869903 - 38869939
Alignment:
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    ||||||||||| || ||||||||||||||||||||||    
T  38869903 ttaacatgtgccttaagggcacaagttaacatgaccc 38869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 11018062 - 11017959
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| |||||| || |||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  11018062 ttatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattatcatgttttccaatgcaaagttgctcattttaggttccttaacat 11017963  T
Q  400 gtgc 403  Q
    ||||    
T  11017962 gtgc 11017959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 41884745 - 41884610
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||| | || |||||| |||| |||| |  |||||| |||||||||| |||  | ||||| |||||||||||| || | ||||||||||    
T  41884745 aactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatattttattttccaatgcaaagttgtttttgttaggttcct 41884646  T
Q  394 taacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    |||||||||| |||| ||||||||||||||| ||||    
T  41884645 taacatgtgcctttaaggcacaagttaacattaccc 41884610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 4084739 - 4084866
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| |||||| || |||| || | ||||||| | ||||||||||| || ||||||| ||||| ||| ||||||||||| ||||| ||||||     
T  4084739 ttatagaaatatacgtattaaaagtcgtgtagtcaactttttaaaagttaaataatcatgtttttcaatgtaaatttgcttattttgggttctttaacac 4084838  T
Q  400 gtgcgtttagggcacaagttaacatgac 427  Q
    ||||  ||||  ||||||||||||||||    
T  4084839 gtgcccttagaacacaagttaacatgac 4084866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 430
Target Start/End: Original strand, 16394859 - 16394996
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||| ||||| |||||| || ||||   || || |||||| |||||||||||||| ||||||| ||||||||||||| | ||||| ||||||    
T  16394859 gaactcattataaaaatatacgtattaaaagtcgaacagtctacttcttaaaagttaaattatcatgtttttcaatgcaaagttgttcattttgggttcc 16394958  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    ||||| |||||  ||| | || |||||| |||||||||    
T  16394959 ttaacttgtgcccttatgacataagttagcatgaccct 16394996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 36012545 - 36012406
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggtt 390  Q
    |||||||  ||||||||||| | ||||  | |||| | |||||||||||| |||| |||||||||  ||||||| |||||| ||||| | ||||||| ||    
T  36012545 aagaacttattatagaaatataagtattgaaagtcgtacaatcaacttcttaaaaattaaattatcgtgttttccaatgcatagttgttcattttagatt 36012446  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    ||||||||| ||| ||| || | ||| |||||||||||||    
T  36012445 ccttaacatatgccttttggacgcaaattaacatgaccct 36012406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 1035602 - 1035708
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgat-gttttcaatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| || |||||| ||||||||| ||||||| | |||||||||| ||| ||  ||||| ||||||||||| |  |||| |||| |    
T  1035602 gaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaaatattatatttttcgatgcaaagttgttctttttgggtttc 1035701  T
Q  393 ttaacat 399  Q
    |||||||    
T  1035702 ttaacat 1035708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 421
Target Start/End: Original strand, 16583208 - 16583317
Alignment:
Q  313 acgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttaggg 411  Q
    ||||||||| |||| || | ||||||||| || ||||||||||| |||||||| |||  ||||||||| | ||| | |||||||||||||||  ||| |     
T  16583208 acgtatcaaaagtcgtgtagtcaacttcttaatagttaaattatcatgttttctaatttaaagttgctcaatttggattccttaacatgtgcccttatga 16583307  T
Q  412 cacaagttaa 421  Q
    ||||||||||    
T  16583308 cacaagttaa 16583317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 31635482 - 31635602
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttcaa-tgcaaagttgcttattttaggttccttaacat 399  Q
    |||| |||||| || ||| || |||| |||| ||||||||| |||||||||| ||| |||||||| | ||| || ||| |  ||||||||||||||||||    
T  31635482 ttatggaaatatacatattaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttctagtgctaaattgttctttttaggttccttaacat 31635581  T
Q  400 gtgcgtttagggcacaagtta 420  Q
    ||||  |||| | ||||||||    
T  31635582 gtgcccttagagtacaagtta 31635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 28490618 - 28490492
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatg-ttttcaatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| || |||||| | || |||||||||||||| |||||||||| ||| ||| |||| ||| || |||||||  ||||  ||||||||||||    
T  28490618 ttatagaaatatacatatcaaaa-tcgtgcaatcaacttctaaaaagttaaaatattatgttttttaatacatagttgctctttttgagttccttaacat 28490520  T
Q  400 gtgcgtttagggcacaagttaacatgac 427  Q
     ||   ||| |||| |||||||||||||    
T  28490519 atgtccttaaggcataagttaacatgac 28490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 442
Target Start/End: Complemental strand, 21008166 - 21008132
Alignment:
Q  408 agggcacaagttaacatgacccttattattattat 442  Q
    |||||||||||||||| ||||||||||||||||||    
T  21008166 agggcacaagttaacaagacccttattattattat 21008132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 439
Target Start/End: Original strand, 31262593 - 31262739
Alignment:
Q  295 aactcgttatagaaata-aacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    ||||| ||||||||||| ||| |||||| | |  |||| ||||||||| ||||||| |  ||| |||||||| |||||||| ||| || |||||||||      
T  31262593 aactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgcaaaattgttttttttaggttgt 31262692  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgacccttattattat 439  Q
    ||||||||||   |||  |||||| ||| ||||||||||||| ||||    
T  31262693 ttaacatgtgttgttaaagcacaaattagcatgacccttatttttat 31262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 5799798 - 5799725
Alignment:
Q  361 ttttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||||||||||||  ||||  |||||||||  |||||||||||  | ||||||||||||| ||||||| |||||    
T  5799798 ttttcaatgcaaaactgctctttttaggttgtttaacatgtgccataagggcacaagttagcatgaccattatt 5799725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 8547425 - 8547477
Alignment:
Q  382 ttttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||| |||||||||||| |||| |||||| |||||| || |||||||||||||    
T  8547425 ttttgggttccttaacacgtgcctttaggacacaagctagcatgacccttatt 8547477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 8612664 - 8612716
Alignment:
Q  382 ttttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||| |||||||||||| |||| |||||| |||||| || |||||||||||||    
T  8612664 ttttgggttccttaacacgtgcctttaggacacaagctagcatgacccttatt 8612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 30058478 - 30058530
Alignment:
Q  380 tattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    ||||||| |||| ||||| |||||  |||||| ||||||||||||||||||||    
T  30058478 tattttaagttctttaacttgtgcccttagggtacaagttaacatgaccctta 30058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 294 - 429
Target Start/End: Original strand, 32786824 - 32786960
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||| ||||| ||||||||| |||| |||| ||||||||| |||||||||| ||| |||||||| ||| ||||||||||  |||  ||||||    
T  32786824 gaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttccaatacaaagttgctcttttcgggttcc 32786923  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    |||||||||||  ||||||||||||||| ||||||||    
T  32786924 ttaacatgtgcccttagggcacaagttagcatgaccc 32786960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 430
Target Start/End: Original strand, 28337239 - 28337375
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| | |||| || | || |||||||||||||| |||||||||| ||  || |||| |||||||||||||||  |||||| |||||    
T  28337239 aactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatgcaaagttgctctttttagattcct 28337338  T
Q  394 taacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||||||| | ||||||||| || |||||||||||||    
T  28337339 taacatgtacctttagggcataatttaacatgaccct 28337375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 430
Target Start/End: Original strand, 32546742 - 32546877
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgat-gttttcaatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| ||| ||||| ||||  ||||||||||||| |||||||||||||| ||  |||| |||||||| ||||| ||||| |||||||    
T  32546742 aactccttatagaaatatacgcatcaaaagtcgggcaatcaacttcttaaaagttaaattatcatattttttaatgcaaa-ttgctcattttgggttcct 32546840  T
Q  394 taacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    ||| ||||||  | ||||||||||||||||| |||||    
T  32546841 taatatgtgccctaagggcacaagttaacatcaccct 32546877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 301 - 431
Target Start/End: Complemental strand, 47991063 - 47990932
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||| ||| ||||||||| || | |||| | |||| || |||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||    
T  47991063 ttatagatatatacgtatcaaaagccgtgcagtgaactccttaaaagttaaattatcatgttttccaatgcaaagttactcattttaggttccttaacat 47990964  T
Q  400 gtgcgtttagggcacaagttaacatgaccctt 431  Q
     | |  ||||| ||||||||||||| ||||||    
T  47990963 atacccttaggacacaagttaacattaccctt 47990932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 431
Target Start/End: Original strand, 25119814 - 25119911
Alignment:
Q  336 acttctcaaaagttaaattatgatg-ttttcaatgcaaagttgcttattttag-gttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||||| |||||||||| ||| ||| |||||||||||||||| ||| ||||   ||||||||||||||||  ||||||||||||||||||||||||||    
T  25119814 acttcttaaaagttaaaatattatgattttcaatgcaaagttacttttttttttgttccttaacatgtgcccttagggcacaagttaacatgaccctt 25119911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 26081061 - 26080961
Alignment:
Q  333 tcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||| ||| |  |||| |||||||||||||||||  |||| |||| ||||||||||||||||    
T  26081061 tcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgaccctt 26080962  T
Q  432 a 432  Q
    |    
T  26080961 a 26080961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 26104848 - 26104748
Alignment:
Q  333 tcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||| ||| |  |||| |||||||||||||||||  |||| |||| ||||||||||||||||    
T  26104848 tcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgaccctt 26104749  T
Q  432 a 432  Q
    |    
T  26104748 a 26104748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 39837521 - 39837393
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgat-gttttcaatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| ||||||||| |||| |||| ||||||||| ||||||| |  ||| ||  |||||| ||||||||||||  |||||| ||  |||||||    
T  39837521 ttatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaacat 39837422  T
Q  400 gtgcgtttagggcacaagttaacatgacc 428  Q
     |||  | |||||||||||||||||||||    
T  39837421 atgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 7907559 - 7907627
Alignment:
Q  365 caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    ||||||||| || ||| ||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  7907559 caatgcaaaattactt-ttttaggttgcttaacatgtgccttaagggcacaagttaacatgacccatatt 7907627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 48633944 - 48633884
Alignment:
Q  382 ttttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttattattattat 442  Q
    ||||||||| ||||||||||||  | ||||||||||||||||  |||||||||||||||||    
T  48633944 ttttaggtttcttaacatgtgccctaagggcacaagttaacactacccttattattattat 48633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 45837914 - 45837981
Alignment:
Q  365 caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    |||||||||||||||  |||||| || ||||||||||||  | ||||||||||||| |||||||||||    
T  45837914 caatgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccctta 45837981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 12094139 - 12094197
Alignment:
Q  92 caccaaacaaaccttggtcacgtccattctttcaaagagatggactcgtctatggtgtt 150  Q
    |||||||||| |||| ||||| || |||||||||||||||||||  | |||||||||||    
T  12094139 caccaaacaagcctttgtcacttcaattctttcaaagagatggaagcatctatggtgtt 12094197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 1446727 - 1446662
Alignment:
Q  92 caccaaacaaaccttggtcacgtccattctttcaaagagatggactcgtctatggtgttgtgttcc 157  Q
    |||||||||| ||||  |||| ||||||||||||||||||||||  | |||||||| || ||||||    
T  1446727 caccaaacaagcctttctcacttccattctttcaaagagatggaagcatctatggttttttgttcc 1446662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 25005504 - 25005460
Alignment:
Q  393 ttaacatgtgcgtttagggcacaagttaacatgacccttattatt 437  Q
    ||||||||||| || | |||||||||||||||||||||| |||||    
T  25005504 ttaacatgtgccttaaaggcacaagttaacatgacccttgttatt 25005460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 292 - 430
Target Start/End: Original strand, 39430292 - 39430431
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggtt 390  Q
    |||||||| ||||||||| | | ||||||| |||| |||| ||||||||| |||||||||| ||| |||||||| ||||||||||||||  ||||  |||    
T  39430292 aagaactcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaaatattatgttttccaatgcaaagttgctctttttgagtt 39430391  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    ||||||||| ||   ||||| |||||||||||||||||||    
T  39430392 ccttaacatatgtccttaggacacaagttaacatgaccct 39430431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 301 - 424
Target Start/End: Original strand, 47006637 - 47006761
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    |||||||||||  || ||||| |||| |||| ||||||||| |||| ||||| | | |||||||| ||||||||||||||| |||| |||||||||||||    
T  47006637 ttatagaaatattcgcatcaaaagtcgtgcattcaacttcttaaaatttaaaatgttatgttttccaatgcaaagttgctttttttgggttccttaacat 47006736  T
Q  400 gtgcgtttagggcacaagttaacat 424  Q
    || |  |||||||||||||||||||    
T  47006737 gtacccttagggcacaagttaacat 47006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 4539891 - 4540026
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||| ||||| | |||| || | || |||||||||||||| |||||||||||||| ||||||| ||||||||| ||| | |||||  ||||||    
T  4539891 aactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgtttttcaatgcaaaattgttcattttgagttcct 4539990  T
Q  394 taacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    |||||||||| ||||   ||||||||||||||||||    
T  4539991 taacatgtgcctttaaaacacaagttaacatgaccc 4540026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 429
Target Start/End: Original strand, 26040851 - 26040985
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaaga-gtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttc 391  Q
    |||||||||||||||||| ||||||||| | ||| |||| | |||||||   |||||||| ||| |||||||  ||||||||||||||  ||||||||||    
T  26040851 gaactcgttatagaaatatacgtatcaaaaagtcgtgcatttaacttct---aagttaaaatattatgttttttaatgcaaagttgctccttttaggttc 26040947  T
Q  392 cttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
     |||||||||    ||||| ||||||||||||||||||    
T  26040948 tttaacatgtatacttaggacacaagttaacatgaccc 26040985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 429
Target Start/End: Original strand, 33791526 - 33791649
Alignment:
Q  307 aaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgt 405  Q
    ||||| |||||||||  ||| | || ||||||| | |||||||||| ||| |||||||| |||| |||||| ||  |||| | ||| ||||||| ||| |    
T  33791526 aaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatattatgttttccaatgtaaagttactctttttcgattctttaacatatgcct 33791625  T
Q  406 ttagggcacaagttaacatgaccc 429  Q
    ||||||||||||||||||||||||    
T  33791626 ttagggcacaagttaacatgaccc 33791649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 45628413 - 45628480
Alignment:
Q  361 ttttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacc 428  Q
    ||||| ||||| |||||||| ||||||||||||||| ||||||  ||||| ||||||||| |||||||    
T  45628413 ttttcgatgcagagttgctttttttaggttccttaatatgtgcccttaggacacaagttagcatgacc 45628480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 54787858 - 54787785
Alignment:
Q  361 ttttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    ||||||||| ||||||   | |||||||||||||| ||||||| || ||| |||||||||||||| ||||||||    
T  54787858 ttttcaatgaaaagttatcttttttaggttccttatcatgtgccttaaggacacaagttaacatgtcccttatt 54787785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 19961175 - 19961294
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| ||||||||| |||  || | ||||||||| | |||||||| ||| |||||||| ||| |||| ||| | ||||||| |||||||||||    
T  19961175 ttatagaaatatacgtatcaaaagttgtgtattcaacttct-agaagttaaaatattatgttttccaatacaaaattgttcattttagattccttaacat 19961273  T
Q  400 gtgcgtttagggcacaagtta 420  Q
    |||  || |||| ||||||||    
T  19961274 gtgtcttaagggtacaagtta 19961294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 432
Target Start/End: Complemental strand, 47069337 - 47069207
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    |||| |||||| || |||||| |||| |||| ||||||| | |||||| ||||||| || |||| ||||| ||| ||||| |||||||||||||||||||    
T  47069337 ttatggaaatatacatatcaaaagtcgtgcagtcaactttt-aaaagtcaaattatcatatttttcaatgtaaa-ttgctcattttaggttccttaacat 47069240  T
Q  400 gtgcgtttagggcacaagttaacatgaccctta 432  Q
    || |  ||| | |||| ||||| ||||||||||    
T  47069239 gtactcttaagacacaggttaatatgaccctta 47069207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 45811411 - 45811364
Alignment:
Q  31 cggtagaaagaatcggaagtttaccagacgagttcctgattcacattc 78  Q
    ||||||| |||||||||| ||||||||||||| | |||||||||||||    
T  45811411 cggtagatagaatcggaactttaccagacgagattctgattcacattc 45811364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 24355485 - 24355447
Alignment:
Q  392 cttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||||||||||| || |||||||||||||||||||||||    
T  24355485 cttaacatgtgccttaagggcacaagttaacatgaccct 24355447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 25102067 - 25101970
Alignment:
Q  335 aacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    |||||||||||||||||| ||| || |||| |||| |||| |||||| || |||||||||||| |||| |  ||||| || ||||||||| ||||||||    
T  25102067 aacttctcaaaagttaaaatatcatatttttcaatacaaaattgctt-ttataggttccttaatatgtacccttaggacataagttaacacgaccctta 25101970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 18030051 - 18030132
Alignment:
Q  323 agtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgc 403  Q
    |||| |||| |||| |||| |||||| ||| ||| || ||||| ||||||||||| ||  ||||||||||||||||||||||    
T  18030051 agtcgtgcattcaatttcttaaaagtcaaaatattatattttccaatgcaaagttactctttttaggttccttaacatgtgc 18030132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 28787773 - 28787837
Alignment:
Q  362 tttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgac 427  Q
    |||||||||||||||| || |||| |||||| ||||| |||  |||||||||||||||| ||||||    
T  28787773 tttcaatgcaaagttgttt-ttttgggttccgtaacaagtgtctttagggcacaagttagcatgac 28787837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 35306616 - 35306531
Alignment:
Q  348 ttaaattatgatgttt-tcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    ||||| ||| |||||| ||||| ||||||||||  |||||| |||||||||||||||  ||| || | ||||||| ||||||||||    
T  35306616 ttaaaatattatgtttctcaatacaaagttgctccttttagattccttaacatgtgcccttaaggtataagttaaaatgaccctta 35306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 37387475 - 37387512
Alignment:
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||||||||||  |||||||||||||||||||||||||    
T  37387475 ttaacatgtgcccttagggcacaagttaacatgaccct 37387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 428
Target Start/End: Original strand, 13637931 - 13638059
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||| ||||| ||| ||||| | || |||| |||| |||| |||| ||||| | | |||||||| || | ||| ||| || |||||||||| |||||||    
T  13637931 ttataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaaatgttatgttttccaacgtaaaattgttttttttaggttctttaacat 13638030  T
Q  400 gtgcgtttagggcacaagttaacatgacc 428  Q
    ||||  | |||| ||||||||||||||||    
T  13638031 gtgccctcagggtacaagttaacatgacc 13638059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 37238796 - 37238756
Alignment:
Q  392 cttaacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  37238796 cttaacatgtgccctaagggcacaagttaacatgaccctta 37238756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 430
Target Start/End: Original strand, 29557513 - 29557643
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| | ||||||| |||| || | | || || | |||||||||||||| |||||||| ||| |||||||||| ||||| |||||||||||||    
T  29557513 ttatagaaatatatgtatcaaaagtcgtgtagttaaatttttaaaagttaaattatcatgttttccaatacaaagttgctcattttgggttccttaacat 29557612  T
Q  400 gtgcgtttagggcacaagttaacatgaccct 430  Q
    ||||  |||||||||||| |||||| |||||    
T  29557613 gtgctcttagggcacaagataacataaccct 29557643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 430
Target Start/End: Complemental strand, 554415 - 554278
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    |||||| ||||||||||| | |||| || || | |||| ||||||| | |||||||||||||| || ||||| |||||||| ||| | ||||| | || |    
T  554415 gaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaaattatcatattttccaatgcaaaattgttcattttggatttc 554316  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||||||||||  ||||| ||||||||||||| |||||    
T  554315 ttaacatgtgctcttaggacacaagttaacatcaccct 554278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 361 - 433
Target Start/End: Original strand, 41063951 - 41064023
Alignment:
Q  361 ttttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttat 433  Q
    ||||||||||||| |||||| ||||||||| |||||||||||| |||| | ||||||||||||| ||| ||||    
T  41063951 ttttcaatgcaaaattgctttttttaggttgcttaacatgtgcttttatgacacaagttaacataacctttat 41064023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 363
Target Start/End: Original strand, 10523689 - 10523758
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttt 363  Q
    |||||| ||||||||||| ||||||||| |||| |||| |||| |||| |||||||||| ||| ||||||    
T  10523689 gaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaactattatgttt 10523758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 10197099 - 10197163
Alignment:
Q  365 caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    ||||| ||||||| |  ||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  10197099 caatgtaaagttgttctttttaggttacttaacatatgcctttaggacacaagttaacatgaccc 10197163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 430
Target Start/End: Original strand, 26105054 - 26105180
Alignment:
Q  305 agaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttca-atgcaaagttgcttattttaggttccttaacatgtgc 403  Q
    ||||||| ||| || || |||| |||| |||| |||| ||||||| |  ||| ||||||||  |||||||||| || ||||| |||| ||||||||||||    
T  26105054 agaaatatacgcataaaaagtcgtgcattcaaattcttaaaagttgatatattatgttttccgatgcaaagtttctcattttgggttgcttaacatgtgc 26105153  T
Q  404 gtttagggcacaagttaacatgaccct 430  Q
      |||||| |||| ||||||| |||||    
T  26105154 ccttagggaacaaattaacataaccct 26105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 19521563 - 19521600
Alignment:
Q  405 tttagggcacaagttaacatgacccttattattattat 442  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  19521563 tttaggtcacaagttaacatgaccattattattattat 19521600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 34178227 - 34178268
Alignment:
Q  390 tccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||||||||||||  ||||||||||| ||||||||||||||    
T  34178227 tccttaacatgtgcccttagggcacaaattaacatgaccctt 34178268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 29508720 - 29508836
Alignment:
Q  316 tatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcac 414  Q
    |||||| |||| || | ||||||||| ||||||| || ||| |||||||| |||||||| |||||  |||| |||||||||||||||||  |||||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  415 aagttaacatgaccctt 431  Q
    ||||||||| |||||||    
T  29508820 aagttaacacgaccctt 29508836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 27918463 - 27918353
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgat-gttttcaatgcaaagttgcttattttaggttcc 392  Q
    |||||||||||||||||| | ||||||| |||| |||| | ||||||| |||||||||| ||| ||  ||||||||||||| |||||  |||| | ||||    
T  27918463 gaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatattatatttttcaatgcaaaattgctctttttggattcc 27918364  T
Q  393 ttaacatgtgc 403  Q
    |||||||||||    
T  27918363 ttaacatgtgc 27918353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 30033556 - 30033474
Alignment:
Q  349 taaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccct 430  Q
    |||| ||| |||||||| ||||||||||||||  ||||  |||||||||||| ||| ||||||||||||||||||||||||||    
T  30033556 taaaatattatgttttccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagttaacatgaccct 30033474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 50297762 - 50297625
Alignment:
Q  296 actcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcctt 394  Q
    |||| ||||||||||| || |||||| || | |||| ||||||||| |||||||    |||  |||||| ||||||||| || ||  |||| |||| |||    
T  50297762 actcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatattgtgttttccaatgcaaaattactcttttttggttgctt 50297663  T
Q  395 aacatgtgcgtttagggcacaagttaacatgaccctta 432  Q
    |||||||||  | |||||||||||||||||||||||||    
T  50297662 aacatgtgccctaagggcacaagttaacatgaccctta 50297625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 431
Target Start/End: Complemental strand, 28675805 - 28675674
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| || |||||| | | ||||| ||||||  | ||||||  |  ||| |||||||| |||||||| |||||  | ||||||| ||||||||    
T  28675805 ttatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgctcttattaggttgcttaacat 28675706  T
Q  400 gtgcgtttagggcacaagttaacatgaccctt 431  Q
    ||||  | ||||||||||||||||||||||||    
T  28675705 gtgccctaagggcacaagttaacatgaccctt 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 428
Target Start/End: Original strand, 24940693 - 24940799
Alignment:
Q  323 agtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaa 421  Q
    |||| |||| ||||||||| |||||||||  ||| ||||||| ||||||||| |||||  |||| | || ||||||||||||  |||||| |||||||||    
T  24940693 agtcgtgcattcaacttcttaaaagttaatatattatgtttttcaatgcaaacttgctctttttggattgcttaacatgtgctcttagggaacaagttaa 24940792  T
Q  422 catgacc 428  Q
    || ||||    
T  24940793 caagacc 24940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 29818547 - 29818477
Alignment:
Q  330 caatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||| ||  | ||||||| |||||||||||    
T  29818547 caatcaacttcttaaaagttaaattatcatgttttccaatgcaaatttattcattttagattccttaacat 29818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 36989868 - 36990002
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagtt-aaattatgatgttttc-aatgcaaagttgcttattttaggttcc 392  Q
    ||||| ||||| ||||| || ||| || |||| |||| ||||||||| ||||||| ||| ||| |||||||| |||||||||||||   |||||| ||||    
T  36989868 aactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaagttcaaaatattatgttttccaatgcaaagttgcactttttagattcc 36989967  T
Q  393 ttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    ||||||||| |  ||||| |||| ||||||| |||||    
T  36989968 ttaacatgtcc--ttaggacacaggttaacaagaccc 36990002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 431
Target Start/End: Complemental strand, 564196 - 564100
Alignment:
Q  336 acttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||||| |||| ||||| | | ||||||| |||||||||||||||  |||||  |||||||||||||||  | |||| |||||||||||| ||||||    
T  564196 acttcttaaaaattaaaatgttatgttttgcaatgcaaagttgctctttttaaattccttaacatgtgccctaagggtacaagttaacataaccctt 564100  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 428
Target Start/End: Original strand, 14139016 - 14139144
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| ||||||||| | || || | |||| |||| |||||||||| ||| || ||||| ||| || | || ||| |||  |||||||||||||    
T  14139016 ttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattttccaatacataattacttttttagggttccttaacat 14139115  T
Q  400 gtgcgtttagggcacaagttaacatgacc 428  Q
    ||||  ||| | |||||||||||||||||    
T  14139116 gtgcccttaagacacaagttaacatgacc 14139144  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 22019517 - 22019569
Alignment:
Q  387 ggttccttaacatgtgcgtttagggcacaagttaacatgacccttattattat 439  Q
    |||| ||||||||||||  |||||||||||||||||||||||| |||| ||||    
T  22019517 ggtttcttaacatgtgcccttagggcacaagttaacatgacccatatttttat 22019569  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 23880202 - 23880240
Alignment:
Q  396 acatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  23880202 acatgtgtctttagggcacaagttaacatgacccttatt 23880240  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 30666963 - 30667012
Alignment:
Q  380 tattttaggttccttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    ||||||| | |||||||| |||||  ||||||||||||||||||||||||    
T  30666963 tattttaagctccttaacttgtgcccttagggcacaagttaacatgaccc 30667012  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 31690652 - 31690729
Alignment:
Q  359 tgttttcaatgcaaagttgcttattttaggttccttaacatgtgcgtttagggcacaagttaacatgacccttattat 436  Q
    |||||| |||||||| ||| |  |||||| || |||||||||| | || ||||||||||||| |||||||||| ||||    
T  31690652 tgtttttaatgcaaaattgttctttttagattgcttaacatgttccttaagggcacaagttagcatgaccctttttat 31690729  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 37861304 - 37861345
Alignment:
Q  390 tccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  37861304 tccttaacttgtgccttaagggcacaagttaacatgaccctt 37861345  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 21894836 - 21894880
Alignment:
Q  387 ggttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||||||||||||||||  | ||||||||||||| ||||||||||    
T  21894836 ggttccttaacatgtgccgtaagggcacaagttagcatgaccctt 21894880  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 39414508 - 39414556
Alignment:
Q  381 attttaggttccttaacatgtgcgtttagggcacaagttaacatgaccc 429  Q
    |||||| |||||||||| |||||  | ||||||||||||||||||||||    
T  39414508 attttaagttccttaacttgtgccctaagggcacaagttaacatgaccc 39414556  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 6469670 - 6469543
Alignment:
Q  301 ttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttccttaacat 399  Q
    ||||||||||| |  ||| || |||| |||| ||||||||| |||| ||||||||| ||||||| ||||||||||||||| ||||| ||||| |||||||    
T  6469670 ttatagaaatatatttattaaaagtcgtgcagtcaacttcttaaaaattaaattatcatgtttttcaatgcaaagttgctcattttcggttctttaacat 6469571  T
Q  400 gtgcgtttagggcacaagttaacatgac 427  Q
     |||  ||| |||| |||||||||||||    
T  6469570 atgcccttaaggcataagttaacatgac 6469543  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 30249178 - 30249261
Alignment:
Q  294 gaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatg-ttttcaatgcaaagtt 376  Q
    |||||| ||||||||||| | ||||||| | || |||| ||||||||| |||||||||| ||| ||| ||||||||||||||||    
T  30249178 gaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaatattatgtttttcaatgcaaagtt 30249261  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 7509680 - 7509631
Alignment:
Q  382 ttttaggttccttaacatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    |||| |||| ||||||||||||  ||||||||||||||| ||||||||||    
T  7509680 ttttgggtttcttaacatgtgcccttagggcacaagttagcatgaccctt 7509631  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 427
Target Start/End: Original strand, 3787460 - 3787596
Alignment:
Q  292 aagaactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttc-aatgcaaagttgcttattttaggtt 390  Q
    |||||||  ||||| ||||| |||||| || |||| | || |||| |||| |||||||||| ||| |||||||| |||| ||| |||||  ||||   ||    
T  3787460 aagaacttattataaaaatatacgtattaaaagtcatacattcaatttcttaaaagttaaactatcatgttttctaatgtaaaattgctctttttgaatt 3787559  T
Q  391 ccttaacatgtgcgtttagggcacaagttaacatgac 427  Q
    | |||||||||||  ||||| || |||||||||||||    
T  3787560 cattaacatgtgcccttaggacataagttaacatgac 3787596  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 35033536 - 35033492
Alignment:
Q  380 tattttaggttccttaacatgtgcgtttagggcacaagttaacat 424  Q
    ||||||| |||||||||||||||| || ||| |||||||||||||    
T  35033536 tattttaagttccttaacatgtgccttgaggacacaagttaacat 35033492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 4551 - 4686
Alignment:
Q  296 actcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgttttcaatgcaaagttgcttattttaggttcctta 395  Q
    |||| ||||||||||| || |||||| |  | |||| ||||||||| |||| ||    ||| || |||||||||  || |||||  ||||||||| ||||    
T  4551 actcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaattgtcatattattttttcaatgtgaaattgctctttttaggttgctta 4650  T
Q  396 acatgtgcgtttagggcacaagttaacatgaccctt 431  Q
    | |||||| |||| | ||||||||||||||||||||    
T  4651 atatgtgcctttatgacacaagttaacatgaccctt 4686  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 19330 - 19292
Alignment:
Q  396 acatgtgcgtttagggcacaagttaacatgacccttatt 434  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  19330 acatgtgtctttagggcacaagttaacatgacccttatt 19292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 635 - 530
Alignment:
Q  295 aactcgttatagaaataaacgtatcaagagtcttgcaatcaacttctcaaaagttaaattatgatgtttt-caatgcaaagttgcttattttaggttcct 393  Q
    ||||| ||||||||||| | ||||||| |||| |||| ||||||||| |||  ||||| | | ||||||| ||||| ||| || || ||||||||||| |    
T  635 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctt 536  T
Q  394 taacat 399  Q
    ||||||    
T  535 taacat 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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