View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15194_low_7 (Length: 363)
Name: NF15194_low_7
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15194_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 32781540 - 32781880
Alignment:
| Q |
10 |
aagaatatgaaacacaaatggtaaccatagcatagacaaatgctctccaaagatgcttgttttctatcatttcatacaattcagcaacaaatgttgaaac |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32781540 |
aagaaaatgaaacacaaatggtaaccatagcatagacaaatgctctccaaagatgcttgttttctatcatttcatacaattcagcaacaaatgttgaaac |
32781639 |
T |
|
| Q |
110 |
agtactcagacatcccaatagaccaaattgaagtcctgttatcacagtatcacaatttgtagtattcacctgcaccaataatcaggtttatagcaatact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32781640 |
agtactcagacatcccaatagaccaaattgaagtcctgttatcacagtatcacaatttgtagtattcacctgcaccaataatcaggtttatagcaatatt |
32781739 |
T |
|
| Q |
210 |
catcacaacctccaaaatcatgtgtcgaaaattcattcagaataactaatataatcaaaatatttttaaatccatagactagtggagtcatgcattttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32781740 |
catcacaacctccaaaatcatgtgtcgaaaattcattcagaataactaatataatcaaaata-ttttaaatccatagactggtggagtcatgcattttaa |
32781838 |
T |
|
| Q |
310 |
agactagattgataattcaattgtacaaaagaacttactgat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32781839 |
agactagattgataattcaattgtacaaaagaacttactgat |
32781880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University