View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15194_low_9 (Length: 315)
Name: NF15194_low_9
Description: NF15194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15194_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51910361 - 51910116
Alignment:
| Q |
1 |
ttctgacacatgacgtttcttcttccattttgaaagttacaaacacttccattcaaaaactnnnnnnnnn-tgatgtcacaaaatagtgtatatataaat |
99 |
Q |
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| T |
51910361 |
ttctgacacatgacgtttcttcttccattttgaaagttacaaacacttccattcaaaaactaaaaaaaaaatgatgtcacaaaatagtgtatatataaat |
51910262 |
T |
|
| Q |
100 |
gtaacagaatactcaatttcagcatagaaatcattttgagaagcaagaaaacaaacctctagaaaacctatctctctttcaagcatctgaaccttggcca |
199 |
Q |
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| T |
51910261 |
gtaacagaattctcaatttcagcatagaaagcattttgagaagcaagaaaacaaacctctagaaaacctatctctctttcaagcatctgaaccttggcca |
51910162 |
T |
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| Q |
200 |
tttcacggcgtttgccatacaaatctggatattcaggaggtgactt |
245 |
Q |
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| T |
51910161 |
tttcacggcgtttgccatacaaatctggatattcaggaggtgactt |
51910116 |
T |
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Back To:
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 18422632 - 18422709
Alignment:
| Q |
147 |
aaaacaaacctctagaaaacctatctctctttcaagcatctgaaccttggccatttcacggcgtttgccatacaaatc |
224 |
Q |
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||||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
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| T |
18422632 |
aaaactaacctcaagaaaacttatctctctttcaagcatttgaactttggccatttcacggcgctttccatacaaatc |
18422709 |
T |
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