View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_high_13 (Length: 464)
Name: NF15195_high_13
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 25 - 447
Target Start/End: Original strand, 6885484 - 6885900
Alignment:
| Q |
25 |
attttctgtttgcaaaagctaaaaatgaattgctaacaaactcgctagcacaaggcatgctaagcgaagaaaattacagtcaaacatgatccattggtgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885484 |
attttctgtttgcaaaagctaaaaatgatttgctaaaaaactcgctagcacaaggcatgctaagcgaagaaaattacagtcaaacatgatccattggtgt |
6885583 |
T |
|
| Q |
125 |
aaca-tattgacaacggttctttacaaacaaaaacaaaaagtgtgtgcaagacttttcacgttcgcaccatagaattagcccaaaaatttatgtgaggtt |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885584 |
aacactattgacaacggttctttacaaacaaaaacaaatagcgtgtgcaatacttttcacgtaagcaccatagaattagcccaaaaatttatgtgaggtt |
6885683 |
T |
|
| Q |
224 |
tgagttgaacatatacatggaaaatgtagcatagatcgatacattaacaacacatatggtcgcattgaattactgtattttctcgaattattattgatgc |
323 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885684 |
tgagttgaatatatacatggaaaatgtggcatagaccgatacatcaacaacacatatggttgcattgaattactgtattttctcgaattattattgatgc |
6885783 |
T |
|
| Q |
324 |
caacatagtgattactgattagtgattgagatggaagaaaatataataagttaggagaatacatttaaaaaatatacatacccggtgatattgcagcact |
423 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885784 |
caacatagtgattaatgatta-------agatggaagaaaatataataagttaggagaatacatttaaaaaatatacatacccggtgatattgcagcact |
6885876 |
T |
|
| Q |
424 |
aatttgcttggaggcagcatatat |
447 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6885877 |
aatttgcttggaggcagcatatat |
6885900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University