View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_high_20 (Length: 444)
Name: NF15195_high_20
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 30581278 - 30581092
Alignment:
| Q |
17 |
atctcctttgtaagaagttttcttactctcttggaactagtactcatagattctgggggtatttgttaatcaattcacatatgcgatttttgcaaataaa |
116 |
Q |
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| T |
30581278 |
atctcctttgtaagaagtttttttactctcttggaactagtactcatagattttgagggtatttgttaatcaattcacatatgcgatttttgcaaataaa |
30581179 |
T |
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| Q |
117 |
aacataaaacaagttcccagtttgtggacaatcaatatcatttatacattcacctgtcgtaaagaaaaagataatataacaatatta |
203 |
Q |
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| T |
30581178 |
aacataaaacaagttcccagtttgtggacaatcaatatcatttatacattcacctgtcgtaaagaaaaagataatataacaatatta |
30581092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 37074822 - 37074881
Alignment:
| Q |
303 |
aaacaagtgaactggtccatatttt-ttctctctaaataaacaatagagaacaatagaga |
361 |
Q |
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| T |
37074822 |
aaacaagtgaactggtccatatttttttctctctaaataaacaatagagaacaatagaga |
37074881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 30581022 - 30580988
Alignment:
| Q |
273 |
tgacttaccaccaacttctgttgtgacaataaaca |
307 |
Q |
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| T |
30581022 |
tgacttaccaccaacttctgttgtgacaataaaca |
30580988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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