View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_high_21 (Length: 441)
Name: NF15195_high_21
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 245 - 425
Target Start/End: Complemental strand, 14925911 - 14925731
Alignment:
| Q |
245 |
gtattattaaaagcggaaaatcaacatgtactttcttttatcattacactaaaattaccaagtggggccattaagaaccaggggaaggaacccgcgctca |
344 |
Q |
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| T |
14925911 |
gtattattaaaagcagaaaatcaacatgtactttcttttagcattacactaaaattaccaagtggggccattaagaaccaggggaaggaacccgcgctca |
14925812 |
T |
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| Q |
345 |
aaagtgtggctgaagggcccatgaccaacatcatgcagtaatcctggacacagatgacaaaggataaagtagtggaattag |
425 |
Q |
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| T |
14925811 |
aaagtgtggctgaagggcccatgaccaacatcatgcagtaatcctggacacagatgacaaaggataaagtagtggaattag |
14925731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14926155 - 14925992
Alignment:
| Q |
1 |
tgggtacagtacacaagtaacttttgtattccatcatgaaagtgatctttcaatttaataactaatgaaaaattaatgaggaagagtgaagaacccaata |
100 |
Q |
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| T |
14926155 |
tgggtacagtacacaagtaacctttgtattccatcatgaaagtgatctttcaatttaataactaatgaaaaattaatgaggaagagtaaagaacccaata |
14926056 |
T |
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| Q |
101 |
atatcatgtggtgcgccaatgtgatattctaagaagtataaagttttaaactatactcagtgtt |
164 |
Q |
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| T |
14926055 |
atatcatgtggtgcgccaatgtgatattctaagaagtataaagttttaaactatactcagtgtt |
14925992 |
T |
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