View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_high_29 (Length: 354)
Name: NF15195_high_29
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 33620307 - 33619973
Alignment:
| Q |
1 |
gacaaaagattgggtttcaattggcgtcaaagattgtttgtttaggaggaaaaccttgttaataatttgttggagaaattggaggggtttaaaaggtcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33620307 |
gacaaaagattgggtttcaattggcgtcaaaaattgtttgtttaggaggaaaaccttgttaataatttgttggagaaattagaggggtgtaaaaggtcaa |
33620208 |
T |
|
| Q |
101 |
tggaggatgatacgtgtgtttggaaattggaggannnnnnntttgttcactgtgaagtcaacatacaagaaactagaaaatgagttggtccttgaagggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33620207 |
tggaggatgatacgtaggtttggaaattggagg-tggggggtttgttcactctgaagtcaacatacaagaaactagaaaatgagttggtccttgaagggg |
33620109 |
T |
|
| Q |
201 |
gtacaaatggtttggcatgacgagtttttgaaaacatttggaaaagtgtgacgcctctaaaagtggtcgcgttatgttggaaagttctattggatcgtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33620108 |
gtacaaatggtttggcatgacgagtttttgaaaacatttggaaaagtgtgacgcctctaaaagtggccgcgttatgttggaaagttctattggatcgtat |
33620009 |
T |
|
| Q |
301 |
accaactagaacaaatcttcttagaaggaatatcct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33620008 |
accaactagaacaaatcttcttagaaggaatatcct |
33619973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University