View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_high_38 (Length: 275)

Name: NF15195_high_38
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_high_38
NF15195_high_38
[»] chr8 (8 HSPs)
chr8 (56-259)||(9452596-9452799)
chr8 (56-154)||(34547277-34547375)
chr8 (101-258)||(30087387-30087545)
chr8 (1-32)||(9452825-9452856)
chr8 (208-259)||(19792849-19792900)
chr8 (194-241)||(24955109-24955156)
chr8 (194-241)||(24970891-24970938)
chr8 (194-234)||(15588239-15588279)
[»] chr3 (7 HSPs)
chr3 (56-259)||(25163914-25164117)
chr3 (56-259)||(46104976-46105180)
chr3 (200-241)||(25704786-25704827)
chr3 (118-234)||(8100287-8100403)
chr3 (1-32)||(25164143-25164174)
chr3 (1-32)||(46105206-46105237)
chr3 (198-259)||(36330677-36330738)
[»] chr4 (7 HSPs)
chr4 (56-259)||(41396582-41396785)
chr4 (200-259)||(23201713-23201772)
chr4 (194-241)||(44742556-44742603)
chr4 (117-259)||(4528503-4528646)
chr4 (194-241)||(13089663-13089710)
chr4 (1-32)||(41396811-41396842)
chr4 (101-175)||(46947012-46947086)
[»] chr6 (2 HSPs)
chr6 (72-259)||(1222582-1222769)
chr6 (206-244)||(14637911-14637949)
[»] chr7 (6 HSPs)
chr7 (56-250)||(39512086-39512280)
chr7 (101-259)||(12487938-12488096)
chr7 (183-259)||(9792510-9792586)
chr7 (194-259)||(38795333-38795398)
chr7 (194-241)||(27619284-27619331)
chr7 (1-32)||(39512029-39512060)
[»] chr2 (2 HSPs)
chr2 (107-259)||(45297533-45297685)
chr2 (194-241)||(10256919-10256966)
[»] chr5 (4 HSPs)
chr5 (118-259)||(3068513-3068658)
chr5 (194-241)||(31956403-31956450)
chr5 (194-251)||(29963913-29963970)
chr5 (194-251)||(30010828-30010885)
[»] chr1 (4 HSPs)
chr1 (183-259)||(6579798-6579874)
chr1 (178-251)||(17010884-17010957)
chr1 (129-234)||(32603164-32603269)
chr1 (178-245)||(6249879-6249946)
[»] scaffold0049 (1 HSPs)
scaffold0049 (118-234)||(13344-13460)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 9452799 - 9452596
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 155  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9452799 gtgtcccatgtgggaatcgatgggtgaaccgctgttgcctaacctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 9452700  T
Q  156 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9452699 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtggaa 9452600  T
Q  256 aata 259  Q
    ||||    
T  9452599 aata 9452596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 34547277 - 34547375
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttct 154  Q
    ||||||||||||||| |||||||||||||| || ||||||||  ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  34547277 gtgtcccatgtgggaatcgatgggtgaacccctcttgcctaacttccatgtaagttgttgtaaagttcatttctgcaacttatttaaaaagtcacttct 34547375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 30087387 - 30087545
Alignment:
Q  101 ccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataa-gag 199  Q
    |||| ||||||| | |||||||||||||||||||||||||  |||||   |||||  || ||||||||| ||||| ||||  | || |||| | || ||     
T  30087387 ccgtataagttggtttaaagttcatttctacaacttattttgaaagttgtttctatgtggttttcttctttacaaataaggtatttttttttaaaaagaa 30087486  T
Q  200 cttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaat 258  Q
    ||||  |||||||||||||||||||||||||||||| || |  || |||||||||||||    
T  30087487 ctttcctaaaattgtgtttggccctacttctccttaaaattggaatataagtagaaaat 30087545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9452856 - 9452825
Alignment:
Q  1 aataaaaggaatctggtgtgggtgatttacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  9452856 aataaaaggaatctggtgtgggtgatttacac 9452825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 19792900 - 19792849
Alignment:
Q  208 aaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||||||||||||||||||||||||||| || |  || ||||||||||||||    
T  19792900 aaattgtgtttggccctacttctccttaaaattggaagataagtagaaaata 19792849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 24955156 - 24955109
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    |||||||||| |||||||| ||||||||||||||||| |||| |||||    
T  24955156 taagagctttattaaaattatgtttggccctacttcttcttaaaagta 24955109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 24970938 - 24970891
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    ||||| |||| |||||||| |||||||||||||||||| |||||||||    
T  24970938 taagaactttattaaaattatgtttggccctacttctctttagaagta 24970891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 15588239 - 15588279
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctcctt 234  Q
    ||||| |||| ||||||||||||||| ||||||||||||||    
T  15588239 taagaactttattaaaattgtgtttgaccctacttctcctt 15588279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 25164117 - 25163914
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 155  Q
    |||||| |||||| | |||||||||||| | ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  25164117 gtgtcctatgtggaaatcgatgggtgaatcactgttgcctaacctccgtgtaaattgttgtaaagttcgtttctacaacttatttgaaaagtcacttcta 25164018  T
Q  156 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaa 255  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25164017 cataattttcttctatacaattaagagacttcttttgataagagctttttttaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaa 25163918  T
Q  256 aata 259  Q
    ||||    
T  25163917 aata 25163914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 46105180 - 46104976
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 155  Q
    ||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||  |||||||| |||| |||||||||    
T  46105180 gtgtcccatgtgggaattgatgggtgaacctctggtgcctaacctccgtgtaagttgttgtaaagtttatttctatgacttatttaaaaaatcacttcta 46105081  T
Q  156 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaa-aaaataagtaga 254  Q
     ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  46105080 tatgattttcttttatacaattaagatacttcttttgataagagtttttttaaaattgtgtttggtcctacttctccttagaagtaaaaaaataagtaga 46104981  T
Q  255 aaata 259  Q
    |||||    
T  46104980 aaata 46104976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 25704827 - 25704786
Alignment:
Q  200 cttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  25704827 ctttattaaaattgtgtttggccctacttctccttaaaagta 25704786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 8100287 - 8100403
Alignment:
Q  118 aagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtt 217  Q
    ||||||| || |||| ||||||| |||||||| |||||  ||||||  |||  | |||  |||| |||||| ||  ||||| |||| |||||||||||||    
T  8100287 aagttcaattttacatcttattttaaaagtcatttctatttgatttctttcctttcaaaaaagatacttctcttattaagaactttattaaaattgtgtt 8100386  T
Q  218 tggccctacttctcctt 234  Q
    |||| ||||||||||||    
T  8100387 tggctctacttctcctt 8100403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25164174 - 25164143
Alignment:
Q  1 aataaaaggaatctggtgtgggtgatttacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  25164174 aataaaaggaatctggtgtgggtgatttacac 25164143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 46105237 - 46105206
Alignment:
Q  1 aataaaaggaatctggtgtgggtgatttacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  46105237 aataaaaggaatctggtgtgggtgatttacac 46105206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 36330738 - 36330677
Alignment:
Q  198 agcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||||| ||||||||||||||| ||| |||||| |||||||||| || | |||| |||||||    
T  36330738 agctttattaaaattgtgtttgaccccacttcttcttagaagtagaagagaagtggaaaata 36330677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 41396785 - 41396582
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 155  Q
    ||||||||||||| | |||||||||||||| | ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  41396785 gtgtcccatgtggaaatcgatgggtgaaccaccgttgcctaacctccgtgtaaattgttgtaaagttcgtttctacaacttatttgaaaagtcacttcta 41396686  T
Q  156 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaa 255  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  41396685 cataatattcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttaaaaataaaaaataagtagaa 41396586  T
Q  256 aata 259  Q
    ||||    
T  41396585 aata 41396582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 23201713 - 23201772
Alignment:
Q  200 cttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||| |||||||| |||||||||||||||||||||||||||| || | |||| |||||||    
T  23201713 ctttattaaaattatgtttggccctacttctccttagaagtagaagagaagtggaaaata 23201772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 44742603 - 44742556
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  44742603 taagagctttattaaaattgtgtttggccccacttcttcttagaagta 44742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 4528503 - 4528646
Alignment:
Q  117 aaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaa-gagacttcttttgataagagcttttttaaaattgtg 215  Q
    |||||||| || |||| ||||||| ||||||||||||||  ||||||  |||  | |||  || || |||||| ||  ||||| |||| |||||||||||    
T  4528503 aaagttcaattttacatcttattttaaaagtcacttctatttgatttctttccttccaaaaaaagatacttctattattaagaactttattaaaattgtg 4528602  T
Q  216 tttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    ||||||||||||||| |||  ||||| || | |||| |||||||    
T  4528603 tttggccctacttcttcttgaaagtagaagagaagtggaaaata 4528646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 13089710 - 13089663
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    |||||||||| ||||||||||||||| ||| |||||| ||||||||||    
T  13089710 taagagctttgttaaaattgtgtttgaccccacttcttcttagaagta 13089663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41396842 - 41396811
Alignment:
Q  1 aataaaaggaatctggtgtgggtgatttacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  41396842 aataaaaggaatctggtgtgggtgatttacac 41396811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 46947086 - 46947012
Alignment:
Q  101 ccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaa 175  Q
    |||||||||||| | ||||||||||||| | | ||||||| ||||||||||| ||  || ||||||||| |||||    
T  46947086 ccgtgtaagttggtttaaagttcatttcaataccttattttaaaagtcacttttatgtggttttcttctttacaa 46947012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 1222769 - 1222582
Alignment:
Q  72 tcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctat 171  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  1222769 tcgattggtgaatcactgttgcctaacctccgtgtaagttgttgtaaagttcgtttctacaacttatttgaaaagtctcttttacatgattttcttctat 1222670  T
Q  172 acaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1222669 acaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctctttataagtaaaaaataagtagaaaata 1222582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 14637911 - 14637949
Alignment:
Q  206 taaaattgtgtttggccctacttctccttagaagtaaaa 244  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  14637911 taaaattatgtttggccccacttctccttagaagtaaaa 14637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 39512086 - 39512280
Alignment:
Q  56 gtgtcccatgtgggactcgatgggtgaacctctgttgcctaatctccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttcta 155  Q
    ||||| ||||||| | ||||| |||||| |  |||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||    
T  39512086 gtgtctcatgtggaaatcgattggtgaatcagtgttgcctgacctccatgtaagttgttgtaaagttcgtttctacaacttatttgaaaaatcactttta 39512185  T
Q  156 catgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataag 250  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39512186 catgatttttttctatacaattaagagacttcttttaataagagcttttttaaaattgtgtttggccctacttctctttagaagtagaaaataag 39512280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 12488096 - 12487938
Alignment:
Q  101 ccgtgtaagttgttgtaaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataagagc 200  Q
    |||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||  || ||||||||| ||||| ||||  ||||||||||  |||||     
T  12488096 ccgtgtaagttggtttaaagttcatttcaacaacttattttaaaagtcacttctatgtggttttcttctttacaaataagttacttcttttgcaaagagt 12487997  T
Q  201 ttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    ||| ||||||||||||| | |||||||||| ||||||||| ||| ||||||||||||||    
T  12487996 tttattaaaattgtgttcgaccctacttcttcttagaagtgaaagataagtagaaaata 12487938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 9792510 - 9792586
Alignment:
Q  183 acttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||||||||  |||||||||| ||||||||||||||||||| |||||| |||| |||||||| |||||| |||||||    
T  9792510 acttcttttattaagagctttattaaaattgtgtttggccccacttcttcttaaaagtaaaagataagtggaaaata 9792586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 38795398 - 38795333
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||||| || | |||| |||||||    
T  38795398 taagaactttattaaaattatgtttggccctacttctccttagaagtagaagagaagtggaaaata 38795333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 27619331 - 27619284
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  27619331 taagaactttattaaaattatgtttggccctacttctccttagaagta 27619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39512029 - 39512060
Alignment:
Q  1 aataaaaggaatctggtgtgggtgatttacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  39512029 aataaaaggaatctggtgtgggtgatttacac 39512060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 259
Target Start/End: Original strand, 45297533 - 45297685
Alignment:
Q  107 aagttgttgtaaagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataagagctttttt 206  Q
    |||||||| | ||||||||||| ||| |||||||  ||||||| |||||  |  ||||||||| || || ||||  |||| ||||   ||||||||| ||    
T  45297533 aagttgtttttaagttcatttcaacaccttattttgaaagtcatttctatgtagttttcttctttataaataaggtacttattttagaaagagctttatt 45297632  T
Q  207 aaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    ||||||||||||||||||||||||||||||||||   | ||||||||||||||    
T  45297633 aaaattgtgtttggccctacttctccttagaagtggtagataagtagaaaata 45297685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 10256966 - 10256919
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  10256966 taagaactttattaaaattatgtttggccctacttctccttagaagta 10256919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 3068513 - 3068658
Alignment:
Q  118 aagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgat----aagagcttttttaaaattg 213  Q
    ||||| ||||||||| |||||||  |||||||||||||  || ||||||||  ||||| ||||| |||| ||||  |    ||||||||| |||||||||    
T  3068513 aagttgatttctacatcttattttgaaagtcacttctatttggttttcttcattacaaataagatactttttttttttataaagagctttattaaaattg 3068612  T
Q  214 tgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    ||||||||||||||| ||  |||||||  || | ||||||||||||    
T  3068613 tgtttggccctacttatctgtagaagtggaagagaagtagaaaata 3068658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 31956403 - 31956450
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagta 241  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  31956403 taagaactttattaaaattatgtttggccctacttctccttagaagta 31956450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 29963970 - 29963913
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagt 251  Q
    |||||||||| | |||||| |||||||||| ||||||| |||||||||||| ||||||    
T  29963970 taagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagt 29963913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 30010828 - 30010885
Alignment:
Q  194 taagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagt 251  Q
    |||||||||| | |||||| |||||||||| ||||||| |||||||||||| ||||||    
T  30010828 taagagctttatcaaaattatgtttggccccacttctctttagaagtaaaagataagt 30010885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 6579798 - 6579874
Alignment:
Q  183 acttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagtagaaaata 259  Q
    |||||||||  |||||||||| ||||||||||||||||||| ||||  ||||||||||| || |||||| |||||||    
T  6579798 acttcttttattaagagctttattaaaattgtgtttggccccactttaccttagaagtagaagataagtggaaaata 6579874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 17010957 - 17010884
Alignment:
Q  178 aagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaaataagt 251  Q
    |||| |||||||||  ||||| |||  ||||||||||||||||||| |||||| |||||||||| || ||||||    
T  17010957 aagacacttcttttattaagaacttaattaaaattgtgtttggccccacttcttcttagaagtagaagataagt 17010884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 32603269 - 32603164
Alignment:
Q  129 tacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtttggccctactt 228  Q
    |||| ||||||| |||||||| |||||  ||||||  |||  | |||  |||| |||||| ||  ||||| |||| ||||||||||||||||||||||||    
T  32603269 tacatcttattttaaaagtcatttctatttgatttctttccttccaaaaaagatacttctcttattaagaactttattaaaattgtgtttggccctactt 32603170  T
Q  229 ctcctt 234  Q
    ||||||    
T  32603169 ctcctt 32603164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 6249879 - 6249946
Alignment:
Q  178 aagagacttcttttgataagagcttttttaaaattgtgtttggccctacttctccttagaagtaaaaa 245  Q
    |||| |||||||||  ||||| |||| ||||||||||||||| || |||||||||||  |||||||||    
T  6249879 aagatacttcttttattaagaactttattaaaattgtgtttgaccatacttctccttgaaagtaaaaa 6249946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 13344 - 13460
Alignment:
Q  118 aagttcatttctacaacttatttgaaaagtcacttctacatgattttcttctatacaattaagagacttcttttgataagagcttttttaaaattgtgtt 217  Q
    ||||||| || |||| ||||||| |||||||| |||||  ||||||  |||  | |||  |||| |||||| ||  ||||| |||| |||||||||||||    
T  13344 aagttcaattttacatcttattttaaaagtcatttctatttgatttctttcctttcaaaaaagatacttctcttattaagaactttattaaaattgtgtt 13443  T
Q  218 tggccctacttctcctt 234  Q
    |||||||||||||||||    
T  13444 tggccctacttctcctt 13460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University