View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_high_40 (Length: 269)
Name: NF15195_high_40
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 3290385 - 3290653
Alignment:
| Q |
1 |
cgcaagccagtcaaattggtacaacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttag |
100 |
Q |
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| T |
3290385 |
cgcaagccagtcaaattggtacaacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttag |
3290484 |
T |
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| Q |
101 |
atttttggtgactgtaataccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatatatnnnnnnnnntgaatgtttcaaaacc |
200 |
Q |
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| T |
3290485 |
atttttggtgactgtaataccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatataaaaaaaaaaaaaaatgttttaaaacc |
3290584 |
T |
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| Q |
201 |
ctaagacctact----------ataccacgtagacatgcttgtgaagtcacttccctcattatcctttg |
259 |
Q |
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| T |
3290585 |
ctaagacctacttgtgactgtaataccacgtagacatgcttgtgaagtcacttccctcatcatcctttg |
3290653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 3288282 - 3288379
Alignment:
| Q |
43 |
attacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcctt---agatttttggtgactgtaataccacgtattcacatgggt |
137 |
Q |
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| T |
3288282 |
attaaaaattccttttgatgtcagcagttcaaattggtatgatatgtttttcttttaaaagattcctagtgactgtaataccacgttgtcacatgggt |
3288379 |
T |
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