View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_high_41 (Length: 268)
Name: NF15195_high_41
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_41 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 3290122 - 3290371
Alignment:
| Q |
19 |
ccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgctgtagagcatgccctaaaaccaatactaat |
118 |
Q |
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| T |
3290122 |
ccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgttgtagatcatgccctaaaaccaatactaat |
3290221 |
T |
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| Q |
119 |
ggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagattggac |
218 |
Q |
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| T |
3290222 |
ggctatttatatagtgatggcacgaaacccttttctttccccttttttcaatttcctcatcaccacctcaacaaagcacatactttgagctagattggac |
3290321 |
T |
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| Q |
219 |
caacaaaaagaaaaggaacaagattggataatccatcaatattagaattt |
268 |
Q |
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| T |
3290322 |
caacaaaaagaaaaggaacaagattggataatccagcaatattagaattt |
3290371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 3257097 - 3257249
Alignment:
| Q |
59 |
taaaatggtttaaggaatcaaggtgtttgctgtagagcatgccctaaaaccaatact--aatggctatttatatagtgatggcacgaaacccttttcttt |
156 |
Q |
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| T |
3257097 |
taaaatggtttaaggaatcaaggtgtttgg---aaagcatgctctaaaactaagactggagaggctatttatatagtgatggcatgaaccacttttcttt |
3257193 |
T |
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| Q |
157 |
ccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagat |
213 |
Q |
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| T |
3257194 |
ccc-ttttttcagtttcctcatcaccacctcagcaatgcatatactttgagctagat |
3257249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 253
Target Start/End: Original strand, 3296130 - 3296289
Alignment:
| Q |
95 |
gcatgccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaag |
194 |
Q |
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|||||| ||||||| || || || ||||||||||||||| ||||| |||| | ||| ||||||| ||||| || |||||||||||||||||| ||||| |
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| T |
3296130 |
gcatgcactaaaactaagaccaaaggctatttatatagttatggctcgaaccacttgcctttcccttttttcaaatttcctcatcaccacctcagcaaag |
3296229 |
T |
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| Q |
195 |
cacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatcca |
253 |
Q |
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| T |
3296230 |
cacatactttgagctatatatgaccaagaaaataaaaaggaaaaaagattggataatcca |
3296289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 3280231 - 3280402
Alignment:
| Q |
59 |
taaaatggtttaaggaatcaaggtgtttgctgtagagcat--gccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttcttt |
156 |
Q |
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| T |
3280231 |
taaaatggattaaggaatcaagttgtttgg---agagcatatgctctaaaactaagactgaaggctatttatatagtgatggcatgaaccacctttcttt |
3280327 |
T |
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| Q |
157 |
ccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaa |
232 |
Q |
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| T |
3280328 |
ccccttttc-cagtttcctcatcaccacctcagcaatgcatatactttcagctagataggatcaagaaaaagaaaa |
3280402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 3288208 - 3288285
Alignment:
| Q |
185 |
ctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatccatcaatatta |
262 |
Q |
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| T |
3288208 |
ctcagcaaagcacatactttgaactacataggaccaa-gaaaagaaaaggcaacaagattgaataatccaacaacatta |
3288285 |
T |
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