View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_high_6 (Length: 536)
Name: NF15195_high_6
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 30274529 - 30275032
Alignment:
| Q |
8 |
agtgagaagaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagat |
107 |
Q |
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| T |
30274529 |
agtgagaagaagtaaaggatcagtggagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagat |
30274628 |
T |
|
| Q |
108 |
aatggatgagaaattgagaagcatgttgttttcaaaactctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274629 |
aatggatgagaaattgagaagcatgttgttttcaaaactct--catagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttc |
30274726 |
T |
|
| Q |
208 |
atcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattcc |
307 |
Q |
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| T |
30274727 |
atcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattcc |
30274826 |
T |
|
| Q |
308 |
attaaccaattcacttcgaacacattttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatac |
407 |
Q |
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| T |
30274827 |
attaaccaattcacttcgaacacattttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatac |
30274926 |
T |
|
| Q |
408 |
taaatataaaagcttacataagcatatatagatgcaaaatcagaagaaactatttgttagggaattatcagtgaaaacatacctgaaaaatggcagaagg |
507 |
Q |
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| T |
30274927 |
taaatataaaagcttacataagcatatatagatgcaaaatcagaagcaactatttgttagggaattatcagtgaaaacatacctgaaaaatggcagaagg |
30275026 |
T |
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| Q |
508 |
cattgg |
513 |
Q |
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|||||| |
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| T |
30275027 |
cattgg |
30275032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 46270591 - 46270434
Alignment:
| Q |
167 |
aataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaa |
266 |
Q |
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|||||||| |||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||| |
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| T |
46270591 |
aataaacacaaggtagggaaatcaaaaacctgtttggcctcatcagtttgtaagctcacatgctcttctgttattgcattgatctctttgttcttggaaa |
46270492 |
T |
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| Q |
267 |
cccaaataaacatacacaccatcacctctctcagtaattccattaaccaattcacttc |
324 |
Q |
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||||||||||| ||||||||||||||||||| |||||| | | |||||||||||||| |
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| T |
46270491 |
cccaaataaacttacacaccatcacctctcttagtaatcctttcaaccaattcacttc |
46270434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 452
Target Start/End: Complemental strand, 46270422 - 46270328
Alignment:
| Q |
358 |
cctcagctctaaaaataaaacctacacatgacagagactagactttatactaaatataaaagcttacataagcatatatagatgcaaaatcagaa |
452 |
Q |
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|||||| |||| ||||||| ||| |||||| || |||||| |||| |||||||||| ||| ||| |||||||||| | ||||||||||||||| |
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| T |
46270422 |
cctcagttctagaaataaagcctgcacatggcatagactaaacttcatactaaataccaaatcttgcataagcatacttggatgcaaaatcagaa |
46270328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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