View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_high_9 (Length: 523)
Name: NF15195_high_9
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_high_9 |
 | |
|
| [»] scaffold0907 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0907 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 71 - 505
Target Start/End: Complemental strand, 3102 - 2669
Alignment:
| Q |
71 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggtgtagctgtggagaaagattctgatgacccttatcttgattttc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3102 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggagtagctgtggagaaagattctgatgacccttatcttgattttc |
3003 |
T |
|
| Q |
171 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
2903 |
T |
|
| Q |
271 |
tcatgggattattataagagcttttactgagatttggaatggagttttctctgttaagtctggtttttcatctgggtttcaccttaatcgtaactcacgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2902 |
tcatgggattattataagagcttttactgagatttggaatggagttttctctgttaagtctggtttttcatctgggtttcaccttaatcgtaactaacgt |
2803 |
T |
|
| Q |
371 |
gacttctaggtcttgttctagatgatcgcgtggatattaactagttgtataaataagttctagtagtatttgactatgtgatgtaattggtatttggtaa |
470 |
Q |
| |
|
|| |||||| ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2802 |
gatttctagttctaattctagatggtcacgtggatattaactagttgtataaataagttctagtagtatttgactatgtgatgtaattggtatttggtaa |
2703 |
T |
|
| Q |
471 |
gtatatgtctggaccgacgatgagtatgatagaat |
505 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2702 |
gtatatgt-tggtccgacgatgagtatgatagaat |
2669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 42945876 - 42945693
Alignment:
| Q |
134 |
gtggagaaagattctgatgacccttatcttgattttcgacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagc |
233 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | ||||| ||| | || ||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
42945876 |
gtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagc |
42945777 |
T |
|
| Q |
234 |
ttttgaactgttttcttcagctgaattcgaaggaacatcatgggattattataagagcttttactgagatttggaatggagttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
42945776 |
ttttgaactgttttcttcagctgaatgcaccttaccatcatggtgttattgttagagcttttactgagatttggaatggagttt |
42945693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University