View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_1 (Length: 638)

Name: NF15195_low_1
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_1
NF15195_low_1
[»] chr5 (1 HSPs)
chr5 (1-625)||(3004400-3005031)
[»] chr4 (4 HSPs)
chr4 (1-367)||(54654663-54655030)
chr4 (419-625)||(54654447-54654664)
chr4 (174-310)||(1065539-1065672)
chr4 (347-413)||(42094340-42094406)
[»] chr3 (5 HSPs)
chr3 (110-415)||(51648950-51649252)
chr3 (349-415)||(8505207-8505273)
chr3 (325-381)||(4866114-4866170)
chr3 (325-381)||(55039881-55039937)
chr3 (492-532)||(49879762-49879802)
[»] chr1 (5 HSPs)
chr1 (110-413)||(20604307-20604611)
chr1 (110-185)||(29310805-29310880)
chr1 (325-408)||(35164380-35164463)
chr1 (325-381)||(30402649-30402705)
chr1 (325-381)||(30409206-30409262)
[»] chr8 (4 HSPs)
chr8 (110-415)||(30847932-30848233)
chr8 (325-381)||(11144349-11144405)
chr8 (325-408)||(1660597-1660680)
chr8 (344-408)||(1599698-1599762)
[»] scaffold0390 (1 HSPs)
scaffold0390 (169-311)||(984-1123)
[»] chr2 (1 HSPs)
chr2 (169-311)||(22140157-22140296)
[»] scaffold0786 (1 HSPs)
scaffold0786 (169-311)||(2452-2591)
[»] chr6 (3 HSPs)
chr6 (483-610)||(6666936-6667074)
chr6 (562-625)||(6781261-6781326)
chr6 (152-191)||(31449287-31449326)
[»] chr7 (1 HSPs)
chr7 (325-381)||(13949966-13950022)


Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 3005031 - 3004400
Alignment:
Q  1 aaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcact---a 97  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |    
T  3005031 aaaccgcagcacatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgtctcacttata 3004932  T
Q  98 accacagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctccc 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3004931 accacagacaactttctattccattgtcttttgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccacctccc 3004832  T
Q  198 aatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcg 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3004831 aatatttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagataggattaaatcg 3004732  T
Q  297 gcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagac 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3004731 gcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgatataatatgaaaatgggagac 3004632  T
Q  397 ataatacatgtaaaacagaatgtgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagcaaggtggaatacta 496  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3004631 ataatacatgtagaacagaatgtgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagtaaggtggaatacta 3004532  T
Q  497 acctgaacagattgctttttcagacttctaatatgtgtagttatttgataacaattcaatcaagg-aacatcatcatttacttgatcggcatctgtcc-- 593  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||      
T  3004531 acctgaacagattgctttttcagacttctaatatgtttagttatttgataacaattcaatcaaggaaacatcatcatttacttgatcagcatctgtcccg 3004432  T
Q  594 tcctggttgaattcaatcccatcttgtttgtg 625  Q
    ||||||||||||||||||||||||||||||||    
T  3004431 tcctggttgaattcaatcccatcttgtttgtg 3004400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 54655030 - 54654663
Alignment:
Q  1 aaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcactaacc 100  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54655030 aaaccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtctgaaaaccgcactagtcacaaccttaaagctttcgtctcactaacc 54654931  T
Q  101 acagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaat 200  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  54654930 acagacagctttgtattccattgtcttctgaataagttttacctgaaacaaaaacataattttttataaaattagcatctccaaaggaccacctcccaat 54654831  T
Q  201 atttatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggca 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54654830 atttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcgaca 54654731  T
Q  300 aacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttg 367  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54654730 aacaatgttctcttgatacaatatcgtagtcaaagaaaactatcttaaaactcaattcatattacttg 54654663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 419 - 625
Target Start/End: Complemental strand, 54654664 - 54654447
Alignment:
Q  419 tgatgaagaaggggcaatgcctaaacagatcaagataattgaaaacacaacataaattttcagcaaggtggaatactaacctgaacagattgctttttca 518  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  54654664 tgatgaagaaggggcaaggcctaaacagatcaagataattgaaaacacaacataaattttcaggaaggaggaatactaacctgaacagattgctttttca 54654565  T
Q  519 gacttctaatatgtgtagttatttgat--------aacaattcaatcaagg-aacatcatcatttacttgatcggcatctgt--cctcctggttgaattc 607  Q
    ||||||||||||||  |||||||| ||        |||||||||||||||| ||||||||||||  ||||||| ||||||||  ||||||||||||||||    
T  54654564 gacttctaatatgttcagttatttaatcatgtgtgaacaattcaatcaaggaaacatcatcattgtcttgatcagcatctgtcccctcctggttgaattc 54654465  T
Q  608 aatcccatcttgtttgtg 625  Q
    ||||||||||||||||||    
T  54654464 aatcccatcttgtttgtg 54654447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 1065539 - 1065672
Alignment:
Q  174 agcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttc 272  Q
    |||||||||| | ||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||| |||||||||||||| ||||||||  ||||||||||    
T  1065539 agcatctccacaagaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaaatagtatattgatttcatatcccaaagagacacttc 1065638  T
Q  273 tttctttcagatgggattaaatcggcaaacaatgttct 310  Q
    |||     ||||||||| ||||||||||||| ||||||    
T  1065639 tttt----agatgggatcaaatcggcaaacattgttct 1065672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 42094340 - 42094406
Alignment:
Q  347 aaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgtaaaaca 413  Q
    |||||||||| | |||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||    
T  42094340 aaactcaatttaaattacttgcaacttgaaataatatgaaaatggaagacattatacatgtagaaca 42094406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 110 - 415
Target Start/End: Complemental strand, 51649252 - 51648950
Alignment:
Q  110 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 209  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| |||||    
T  51649252 tttctatgtcattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 51649153  T
Q  210 -atatgtacat---catcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaacaat 305  Q
     ||||||||||   |||| ||||||||||   |||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||    
T  51649152 gatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacacttctttc----agatgggatcaaatcggcaaacaat 51649060  T
Q  306 gttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacat 405  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  51649059 gttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcgtatgaaaatgggagacataatacat 51648960  T
Q  406 gtaaaacaga 415  Q
    ||| ||||||    
T  51648959 gtagaacaga 51648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 8505207 - 8505273
Alignment:
Q  349 actcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgtaaaacaga 415  Q
    ||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||| || ||||||    
T  8505207 actcaattcatattacttgcaacttgaaatcgtatgaaaataggagacataatacatatagaacaga 8505273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 4866170 - 4866114
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  4866170 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 4866114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 55039881 - 55039937
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  55039881 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 55039937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 492 - 532
Target Start/End: Complemental strand, 49879802 - 49879762
Alignment:
Q  492 tactaacctgaacagattgctttttcagacttctaatatgt 532  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  49879802 tactaacctgaacagattcctttctcagactactaatatgt 49879762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 110 - 413
Target Start/End: Complemental strand, 20604611 - 20604307
Alignment:
Q  110 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 209  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| |||||    
T  20604611 tttctatgccattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 20604512  T
Q  210 -atatgtacat-------catcgtcatcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaa 301  Q
     ||||||||||       |||| ||||||||||   |||||||||||||||||||||||||||||| ||||||||    ||||||||| |||||| ||||    
T  20604511 gatatgtacatgcatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacgcttctttc----agatgggatcaaatcgacaaa 20604419  T
Q  302 caatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataat 401  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  20604418 caatgttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcgtatgaaaatgggagacataat 20604319  T
Q  402 acatgtaaaaca 413  Q
    ||||||| ||||    
T  20604318 acatgtagaaca 20604307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 29310880 - 29310805
Alignment:
Q  110 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaa 185  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29310880 tttctattccattgtcttttaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaa 29310805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Complemental strand, 35164463 - 35164380
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 408  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||  ||| |||| | |||| |||||||||    
T  35164463 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataattcgaatatggaaaacattatacatgta 35164380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 30402649 - 30402705
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  30402649 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 30402705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 30409206 - 30409262
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  30409206 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 30409262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 110 - 415
Target Start/End: Original strand, 30847932 - 30848233
Alignment:
Q  110 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttattag 209  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || ||| |||||    
T  30847932 tttctattccattgtcttctaaattagttttacctgaaacaaaaacataattttctataaaatttgc-tctccaaaggaccacctccaaaaattaattag 30848030  T
Q  210 -atatgtacatcatcgt---catcacataaagtagtatattgatttgatatcccatggagacacttctttctttcagatgggattaaatcggcaaacaat 305  Q
     |||||||||||||| |   |||||||||   |||||||||||||||||||||  |||||||||||||||     ||||||||| |||||||||||||||    
T  30848031 gatatgtacatcatcataatcatcacata---tagtatattgatttgatatcctgtggagacacttctttt----agatgggatcaaatcggcaaacaat 30848123  T
Q  306 gttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacat 405  Q
    ||||||| | |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30848124 gttctctaattgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgcaacttgaaatcatatgaaaatgggagacataatacat 30848223  T
Q  406 gtaaaacaga 415  Q
    ||| ||||||    
T  30848224 gtagaacaga 30848233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 11144405 - 11144349
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  11144405 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 11144349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 1660597 - 1660680
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 408  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| || | |||||  ||| |||| | |||| |||||||||    
T  1660597 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttaaaataattcgaatatggaaaacattatacatgta 1660680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 1599698 - 1599762
Alignment:
Q  344 ttaaaactcaattcatattacttgcaacttgagataatatgaaaatgggagacataatacatgta 408  Q
    ||||||||||||| | ||||||||||| |||| |||||  ||| |||| |||||| |||||||||    
T  1599698 ttaaaactcaatttaaattacttgcaatttgaaataattcgaatatggaagacattatacatgta 1599762  T

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Target: scaffold0390 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 1123 - 984
Alignment:
Q  169 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 267  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  1123 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 1024  T
Q  268 acttctttctttcagatgggattaaatcggcaaacaatgttctc 311  Q
    |||||    ||||||||||||| ||||||||||||| |||||||    
T  1023 acttc----tttcagatgggatcaaatcggcaaacattgttctc 984  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 22140157 - 22140296
Alignment:
Q  169 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 267  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  22140157 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 22140256  T
Q  268 acttctttctttcagatgggattaaatcggcaaacaatgttctc 311  Q
    |||||||||     |||||||| ||||||||||||| |||||||    
T  22140257 acttctttcg----gatgggatcaaatcggcaaacattgttctc 22140296  T

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Target: scaffold0786 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 2591 - 2452
Alignment:
Q  169 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 267  Q
    |||| |||||||||||||||||| |||| || ||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  2591 aaataagcatctccaaaggaccacctccaaagattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaatgagac 2492  T
Q  268 acttctttctttcagatgggattaaatcggcaaacaatgttctc 311  Q
    |||||    ||||||||||||| ||||||| ||||| |||||||    
T  2491 acttc----tttcagatgggatcaaatcggaaaacattgttctc 2452  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 483 - 610
Target Start/End: Complemental strand, 6667074 - 6666936
Alignment:
Q  483 aaggtggaatactaacctgaacagattgctttttcagacttctaatatgtgtagttatttgat--------aacaattcaatcaagg-aacatcatcatt 573  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||   ||||||||||        ||||  |||||||||| ||||||||||||    
T  6667074 aaggtggtgtactaacctgaacagattgctttttcagacttgtaatatgttcggttatttgatcatgtgtgaacatatcaatcaaggaaacatcatcatt 6666975  T
Q  574 tacttgatcggcatctgt--cctcctggttgaattcaat 610  Q
     |||||||||||||||||  |||||||||||||| ||||    
T  6666974 aacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 562 - 625
Target Start/End: Original strand, 6781261 - 6781326
Alignment:
Q  562 aacatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtg 625  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||    
T  6781261 aacagcatcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtg 6781326  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 31449326 - 31449287
Alignment:
Q  152 aaacataattttctataaaattagcatctccaaaggacca 191  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31449326 aaacataattttctataaaattagcatctccaaaggacca 31449287  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 13950022 - 13949966
Alignment:
Q  325 gcagtcaaagaaaactatcttaaaactcaattcatattacttgcaacttgagataat 381  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||    
T  13950022 gcagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaataat 13949966  T

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