View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_11 (Length: 521)
Name: NF15195_low_11
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 19172813 - 19173318
Alignment:
| Q |
18 |
acaaagttggttataacagaaaatgtgaaactgaactaacagaaaaggtaactataacagaaaagcttaactatggttaaatacaattagcaataatcag |
117 |
Q |
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| T |
19172813 |
acaaagttggttataacagaaaatgtgaaactgaactaacagaaaaggta-ctataacagaaaagcttaactatggttaaatacaattagcaataatcag |
19172911 |
T |
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| Q |
118 |
ttaacaaataatcacttaactgtattattatcatttcaactgcatgttctttatttttataacagtaaataatcttggttcatgatttacataagtaaag |
217 |
Q |
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| T |
19172912 |
ctaacaaataatcacttaactgtattattataatttcaactgcatgttctttatttttgtagcagtaaataatcttggttcatgatttacataagtaaag |
19173011 |
T |
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| Q |
218 |
caaccaagttgaaagaatgttggatgtgatgatttaactcccttgcagttttgtatggatttatgaaagtatgagaaatacatcaatttggtccctcagt |
317 |
Q |
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| T |
19173012 |
caaccaagttgaaagaatgttggatgtgatgatttaactccctttcagttttgtttaggtttatgaaagtacgagaaatacatcaatttggtccctcagt |
19173111 |
T |
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| Q |
318 |
tgacttatctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaata-- |
415 |
Q |
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| T |
19173112 |
taacttacctagtgaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttctcatactttacggaccttttagttaattttaatagt |
19173211 |
T |
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| Q |
416 |
--------------ggtgatagagtgataatttagcgattaaattgtatgtttattcatatgaaacgatgtttcttatttacttcaatatttctgtattg |
501 |
Q |
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| T |
19173212 |
tcatggacaaaattggtgatagagtgataatttagagattaaattgaatgtttattcatatgaaatgatgtttcttatttacttcaatatttctgtattg |
19173311 |
T |
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| Q |
502 |
ttaacct |
508 |
Q |
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||||||| |
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| T |
19173312 |
ttaacct |
19173318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 19177910 - 19178095
Alignment:
| Q |
18 |
acaaagttggttataacagaaaatgtgaaactgaactaacagaaaaggtaactataacagaaaagcttaactatggttaaatacaattagcaataatcag |
117 |
Q |
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| T |
19177910 |
acaaagttggttataacagaaaatgtgaaa-tgaactaacagaaaagttaactataacagaaaagcttgactatggttaaatacaattaacaataatcag |
19178008 |
T |
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| Q |
118 |
ttaacaaataatcacttaactgtattattatcatttcaactgcatgttctttatt--tttataacagtaaataatcttggttcatga |
202 |
Q |
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| T |
19178009 |
ttaataactaatcacttgactgtattattataatttcaattgcatgttgtttcttaatttataacagtaaagaatcttggttgatga |
19178095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 300 - 504
Target Start/End: Original strand, 19178129 - 19178349
Alignment:
| Q |
300 |
tcaatttggtccctcagttgacttatctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggacctt |
399 |
Q |
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| T |
19178129 |
tcaatttggtccctcggttaatttatctagggaccaaattaatgaacaatagtatagtttacgtaccatattgatgtatttctcatagtttccggacttt |
19178228 |
T |
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| Q |
400 |
ttaattaattttaata----------------ggtgatagagtgataatttagcgattaaattgtatgtttattcatatgaaacgatgtttcttatttac |
483 |
Q |
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| T |
19178229 |
ttagttgattttaataattcatggacgaaataggtgatagagtgatagtttagcgattaaattgaatgtttattcatatgaaatgatgtttcttatttac |
19178328 |
T |
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| Q |
484 |
ttcaatatttctgtattgtta |
504 |
Q |
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| T |
19178329 |
ttcagtatttttgtattgtta |
19178349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 6039505 - 6039596
Alignment:
| Q |
287 |
tatgagaaatacatcaatttggtccctcagttgacttatctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtat |
378 |
Q |
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| T |
6039505 |
tatgagaaatacatcaatttggtctctcaattgactgatctagcgaccaaattgaaagatgagaatagagtttagagatcatattgatgtat |
6039596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 29249591 - 29249501
Alignment:
| Q |
325 |
tctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaatag |
416 |
Q |
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| T |
29249591 |
tctagggactaaattgatggatgagattatagttgagggactacattgat-tatttctcatagtttatggaccttttagtcaattttaatag |
29249501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 12607320 - 12607260
Alignment:
| Q |
356 |
gtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaatag |
416 |
Q |
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| T |
12607320 |
gtttagggactaaattgatgtatttttcatagtttatgaaccttttagttgattttaatag |
12607260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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