View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_13 (Length: 512)

Name: NF15195_low_13
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_13
NF15195_low_13
[»] chr2 (6 HSPs)
chr2 (1-481)||(37493948-37494432)
chr2 (224-278)||(17213795-17213849)
chr2 (227-277)||(36225592-36225642)
chr2 (224-276)||(6735405-6735457)
chr2 (116-179)||(2262776-2262839)
chr2 (229-272)||(36501904-36501946)
[»] chr8 (4 HSPs)
chr8 (225-286)||(30011816-30011877)
chr8 (223-278)||(34742795-34742850)
chr8 (145-218)||(26819297-26819368)
chr8 (229-273)||(39994002-39994046)
[»] chr1 (6 HSPs)
chr1 (222-283)||(12395503-12395564)
chr1 (116-196)||(16979584-16979664)
chr1 (145-175)||(12395624-12395654)
chr1 (227-273)||(14303893-14303939)
chr1 (228-278)||(24126847-24126897)
chr1 (225-278)||(1879538-1879591)
[»] chr5 (7 HSPs)
chr5 (223-278)||(28578533-28578588)
chr5 (224-285)||(29039013-29039073)
chr5 (219-269)||(9800882-9800932)
chr5 (225-277)||(16962139-16962191)
chr5 (222-278)||(21815311-21815367)
chr5 (147-215)||(35035587-35035655)
chr5 (222-278)||(39156729-39156785)
[»] chr7 (10 HSPs)
chr7 (224-278)||(5661890-5661944)
chr7 (222-282)||(46766012-46766072)
chr7 (218-263)||(39538403-39538448)
chr7 (238-278)||(27721394-27721434)
chr7 (228-274)||(29117901-29117947)
chr7 (145-218)||(24547700-24547773)
chr7 (148-201)||(36853083-36853136)
chr7 (217-261)||(8960971-8961015)
chr7 (222-278)||(23113413-23113469)
chr7 (147-218)||(35169988-35170057)
[»] chr4 (9 HSPs)
chr4 (217-275)||(7601437-7601495)
chr4 (223-277)||(40263998-40264052)
chr4 (224-278)||(24362306-24362361)
chr4 (223-278)||(35341481-35341536)
chr4 (145-191)||(19392505-19392551)
chr4 (148-178)||(36371785-36371815)
chr4 (149-218)||(21570851-21570920)
chr4 (149-198)||(21571017-21571066)
chr4 (222-278)||(19028080-19028136)
[»] chr3 (2 HSPs)
chr3 (227-276)||(47702682-47702731)
chr3 (252-280)||(33880317-33880345)
[»] chr6 (1 HSPs)
chr6 (222-278)||(16487543-16487599)


Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 37493948 - 37494432
Alignment:
Q  1 atgaagatggaggaatagaatgtctattaatggataaaaacattccagtcacaaaatgtagcagtcacattgagactgcggtagaggttaccggttataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37493948 atgaagatggaggaatagaatgtctattaatggataaaaacattccagtcacaaaatgtagcagtcacattgagactgcggtagaggttaccggttataa 37494047  T
Q  101 aacannnnnnnaggatttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagtt 200  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37494048 aacatttttttaggatttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagtt 37494147  T
Q  201 acgatcaaattcaaaca----taacggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttctannnnnnnna 296  Q
    |||||||||||||||||    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        |    
T  37494148 acgatcaaattcaaacatgtttaacagttatgattgattgacagtgtaaaacatattcacactgacagtgtatatgaattaagtctttctatttttttta 37494247  T
Q  297 tcattctcctctctaaatctctttagtgaggtgaagtgatgtatgaaactaattgtcactcatgtgatttattattaggcttcttcatcagttcaacaag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37494248 tcattctcctctctaaatctctttagtgaggtgaagtgatgtatgaaactaattgtcactcatgtgatttattattaggcttcttcatcagttcaacaag 37494347  T
Q  397 attgtatgatttttccatcatcaggggctggtggatcaacaaatttgatgcagggattcaacaatagtgcaaattgtgcacttat 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37494348 attgtatgatttttccatcatcaggggctggtggatcaacaaatttgatgcagggattcaacaatagtgcaaattgtgcacttat 37494432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 17213795 - 17213849
Alignment:
Q  224 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||||||||||||| ||||  || |||||||||||| ||||||||||||||    
T  17213795 ttatgattgattgacagtataaactatctttacactgacaatgtatatgaattaa 17213849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 36225642 - 36225592
Alignment:
Q  227 tgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 277  Q
    |||||||||| |||||||||| || |||||||||||| |||||||||||||    
T  36225642 tgattgattggcagtgtaaaatatctttacactgacaatgtatatgaatta 36225592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 6735405 - 6735457
Alignment:
Q  224 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatt 276  Q
    ||||||||| ||||||||||||||||| | ||||||||||||| |||| ||||    
T  6735405 ttatgattggttgacagtgtaaaacatttgtacactgacagtgcatataaatt 6735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 2262776 - 2262839
Alignment:
Q  116 tttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcata 179  Q
    ||||||||| ||||||  | ||||| || |||||||||||||||||||| ||||||||| ||||    
T  2262776 tttaattttcatacacaatcaatgtgaacagttttacactgtcagcacaacacaaccaaccata 2262839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 36501946 - 36501904
Alignment:
Q  229 attgattgacagtgtaaaacatatttacactgacagtgtatatg 272  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  36501946 attggttgacagtgtaaaa-atatttacactgacagtgtatatg 36501904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 30011816 - 30011877
Alignment:
Q  225 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttct 286  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  30011816 tatgattgattgacagtgtaaaaaatgtttaaactgacagtgtatatgaattaagtcattct 30011877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 34742795 - 34742850
Alignment:
Q  223 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||| ||||||  |||||||| ||||||||| |||| |||||||||||||||    
T  34742795 gttatgatggattgatggtgtaaaatatatttacattgacggtgtatatgaattaa 34742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 26819368 - 26819297
Alignment:
Q  145 agttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 218  Q
    ||||||||||| | |||| |||||||||||||||   |||||||||| |||||||| |||| ||| ||||||||    
T  26819368 agttttacactattagcaaatcacaaccaatcat--gtgtgactttagaagtagttgcgataaaagtcaaacat 26819297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 39994002 - 39994046
Alignment:
Q  229 attgattgacagtgtaaaacatatttacactgacagtgtatatga 273  Q
    |||||||||||||||||||| | |||||||||||| || ||||||    
T  39994002 attgattgacagtgtaaaacttttttacactgacaatgcatatga 39994046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 12395564 - 12395503
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctt 283  Q
    |||||||||||||||||| |||||||  | ||||||||||||||||||||||||||| ||||    
T  12395564 ggttatgattgattgacactgtaaaatctctttacactgacagtgtatatgaattaaatctt 12395503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 16979584 - 16979664
Alignment:
Q  116 tttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttataagt 196  Q
    ||||||||| ||||||||| | ||| || || |||||||||||| || |||||||||||  ||| ||||||||||| ||||    
T  16979584 tttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt 16979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 12395654 - 12395624
Alignment:
Q  145 agttttacactgtcagcacatcacaaccaat 175  Q
    |||||||||||||||||||||||||||||||    
T  12395654 agttttacactgtcagcacatcacaaccaat 12395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 14303939 - 14303893
Alignment:
Q  227 tgattgattgacagtgtaaaacatatttacactgacagtgtatatga 273  Q
    ||||||||||||||||||||| || |||||| ||||| |||||||||    
T  14303939 tgattgattgacagtgtaaaaaatctttacattgacaatgtatatga 14303893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 24126897 - 24126847
Alignment:
Q  228 gattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||||| ||||||||| ||||||||||  ||| ||||||||||||||    
T  24126897 gattgattgatagtgtaaaagatatttacacaaacaatgtatatgaattaa 24126847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 1879538 - 1879591
Alignment:
Q  225 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||| | ||||||| ||||||||||| || |||| ||||||||||    
T  1879538 tatgattgattgaaactgtaaaaaatatttacactaacggtgtgtatgaattaa 1879591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 28578588 - 28578533
Alignment:
Q  223 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||    
T  28578588 gttatgattgattgacaatgtaaaacatttttacattgaaagtgtatatgaattaa 28578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 29039073 - 29039013
Alignment:
Q  224 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttc 285  Q
    |||| |||||||||| |||||||| | ||||||||||||| |||||||||||||| ||||||    
T  29039073 ttataattgattgac-gtgtaaaaaacatttacactgacaatgtatatgaattaattctttc 29039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 9800932 - 9800882
Alignment:
Q  219 aacggttatgattgattgacagtgtaaaacatatttacactgacagtgtat 269  Q
    ||||||||| ||||||| || |||||| | |||||||||||||||||||||    
T  9800932 aacggttataattgattaactgtgtaataaatatttacactgacagtgtat 9800882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 16962191 - 16962139
Alignment:
Q  225 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 277  Q
    |||||||||| |||||||||||| |  |||| ||||||||||||||| |||||    
T  16962191 tatgattgatcgacagtgtaaaaaaactttatactgacagtgtatataaatta 16962139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 21815311 - 21815367
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||||||||| || ||| ||||||||||||  |||| |||| ||||||    
T  21815311 ggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaa 21815367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 35035655 - 35035587
Alignment:
Q  147 ttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaa 215  Q
    ||||||| |||||| | ||||||||||||||||  ||||| |||| ||||||||| ||| ||| |||||    
T  35035655 ttttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaaatcaaa 35035587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 39156729 - 39156785
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||||||||| |||||| ||||||||| ||  |||| |||| ||||||    
T  39156729 ggttatgattgattgacagagtaaaaaatatttacattgttagtgcatatcaattaa 39156785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 5661890 - 5661944
Alignment:
Q  224 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||||||||||||    
T  5661890 ttatgattgattgacagtgtaaaaaatctttccactgatagtgtatatgaattaa 5661944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 46766072 - 46766012
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtct 282  Q
    ||||||||| ||||||| |||||  |  |||||||||||||||||||||||||||||||||    
T  46766072 ggttatgatcgattgactgtgtagtaagtatttacactgacagtgtatatgaattaagtct 46766012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 39538448 - 39538403
Alignment:
Q  218 taacggttatgattgattgacagtgtaaaacatatttacactgaca 263  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  39538448 taacggttataattgattgatagtataaaacatatttacactgaca 39538403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 27721394 - 27721434
Alignment:
Q  238 cagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  27721394 cagtgtaaaacataattacactgacagtgtacatgaattaa 27721434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 29117947 - 29117901
Alignment:
Q  228 gattgattgacagtgtaaaacatatttacactgacagtgtatatgaa 274  Q
    |||||||||||| | ||||| ||||||||||||| ||||||||||||    
T  29117947 gattgattgacaatctaaaaaatatttacactgatagtgtatatgaa 29117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 24547700 - 24547773
Alignment:
Q  145 agttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 218  Q
    |||||||||||||||  | ||||||||||||||||  ||||| |||| ||||||||| |||  || ||||||||    
T  24547700 agttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaacat 24547773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 36853083 - 36853136
Alignment:
Q  148 tttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagtta 201  Q
    |||||| |||||| | ||||||||||||||||  |||||||||| |||||||||    
T  36853083 tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagtta 36853136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 8961015 - 8960971
Alignment:
Q  217 ataacggttatgattgattgacagtgtaaaacatatttacactga 261  Q
    |||||| | |||||||||||||||||||||| || ||||||||||    
T  8961015 ataacgatcatgattgattgacagtgtaaaaaatctttacactga 8960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 23113469 - 23113413
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    |||||||||||||||||| |||||||  | ||||||||||||||  |||||| ||||    
T  23113469 ggttatgattgattgacattgtaaaaattctttacactgacagtagatatgagttaa 23113413  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 35170057 - 35169988
Alignment:
Q  147 ttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 218  Q
    ||||||||||||| || |||| ||||||||||   |||||||||| ||||||||| ||| ||| ||||||||    
T  35170057 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacat 35169988  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 7601437 - 7601495
Alignment:
Q  217 ataacggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaat 275  Q
    |||||| |||||||||||||||||||||||| || |||||||||| | |||||||||||    
T  7601437 ataacgattatgattgattgacagtgtaaaaaatctttacactgataatgtatatgaat 7601495  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 40263998 - 40264052
Alignment:
Q  223 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 277  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||| ||||||||||    
T  40263998 gttatgattgactgacagtgtaaaaaatatttacactgcctgtgcatatgaatta 40264052  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 24362361 - 24362306
Alignment:
Q  224 ttatgattgattgacagtgtaaaaca-tatttacactgacagtgtatatgaattaa 278  Q
    |||||||||| |||| |||||||| | |||||||| ||||||||||||||||||||    
T  24362361 ttatgattgactgaccgtgtaaaaaaatatttacattgacagtgtatatgaattaa 24362306  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 35341536 - 35341481
Alignment:
Q  223 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||||||| ||||||| || ||||||| ||| |||||||| ||||||    
T  35341536 gttatgattgattgacaatgtaaaagatctttacaccgaccgtgtatataaattaa 35341481  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 19392505 - 19392551
Alignment:
Q  145 agttttacactgtcagcacatcacaaccaatcataaatgtgacttta 191  Q
    ||||||||||||||||| ||||||||||||||||   ||||||||||    
T  19392505 agttttacactgtcagcccatcacaaccaatcatctgtgtgacttta 19392551  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 36371785 - 36371815
Alignment:
Q  148 tttacactgtcagcacatcacaaccaatcat 178  Q
    |||||||||||||||||||||||||||||||    
T  36371785 tttacactgtcagcacatcacaaccaatcat 36371815  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 21570920 - 21570851
Alignment:
Q  149 ttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 218  Q
    ||||| ||||||||||||||||||||||||   |||||||||| |||| || | ||| ||| ||||||||    
T  21570920 ttacattgtcagcacatcacaaccaatcatgtgtgtgactttagaagtcgtcatgataaaagtcaaacat 21570851  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 21571066 - 21571017
Alignment:
Q  149 ttacactgtcagcacatcacaaccaatcataaatgtgactttataagtag 198  Q
    ||||| |||||||||||||| ||||||||| | |||||||||| ||||||    
T  21571066 ttacattgtcagcacatcactaccaatcatgagtgtgactttagaagtag 21571017  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 19028080 - 19028136
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||| |||||||||| |||||||  ||||||||||| ||||| |||| ||||||    
T  19028080 ggttatgcttgattgacattgtaaaagttatttacactgtcagtgcatatcaattaa 19028136  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 47702731 - 47702682
Alignment:
Q  227 tgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatt 276  Q
    ||||||||||||||||||||| || |||||||| ||| | ||||||||||    
T  47702731 tgattgattgacagtgtaaaaaatctttacactaacaatatatatgaatt 47702682  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 33880345 - 33880317
Alignment:
Q  252 tttacactgacagtgtatatgaattaagt 280  Q
    |||||||||||||||||||||||||||||    
T  33880345 tttacactgacagtgtatatgaattaagt 33880317  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 16487599 - 16487543
Alignment:
Q  222 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 278  Q
    ||||||||||||||||||| || ||| ||||||||||||  |||| |||| ||||||    
T  16487599 ggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaa 16487543  T

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