View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_14 (Length: 472)
Name: NF15195_low_14
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 147 - 455
Target Start/End: Original strand, 11847983 - 11848291
Alignment:
| Q |
147 |
tgagtttcggagtttcctatgttcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaa |
246 |
Q |
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| T |
11847983 |
tgagttttggagtttcctatgttcttcaccttgttttactgttttttatgatgtttattgctgcatggtctcaagatgacgttgttatgcaaaagctgaa |
11848082 |
T |
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| Q |
247 |
aagttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgtagcggaacgacggtcactgaaatt |
346 |
Q |
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| T |
11848083 |
aagttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgcagcggaacgacggtcactgaaatt |
11848182 |
T |
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| Q |
347 |
aatttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggag |
446 |
Q |
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| T |
11848183 |
aatttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggag |
11848282 |
T |
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| Q |
447 |
gttttccat |
455 |
Q |
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| T |
11848283 |
gttttccat |
11848291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 11859164 - 11859005
Alignment:
| Q |
150 |
gtttcggagtttcctatgttcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaaaag |
249 |
Q |
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| T |
11859164 |
gtttcagagtttcctacgttcttcaccttgttgtgttgttttctatgatgtttgtttctgcatggtctcaagatgatgttgttatgcaaaagctgaaaag |
11859065 |
T |
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| Q |
250 |
ttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaa |
309 |
Q |
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| T |
11859064 |
ttctataaaatcatcaagcaatgatcttgattggtcagactcagattttcgcaaatggaa |
11859005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 169 - 307
Target Start/End: Original strand, 11834619 - 11834757
Alignment:
| Q |
169 |
tcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaaaagttctataacatcatcaagc |
268 |
Q |
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| T |
11834619 |
tcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagc |
11834718 |
T |
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| Q |
269 |
aatgatcttgattggtcagacaaagattgttgcaaatgg |
307 |
Q |
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| T |
11834719 |
agtaatcttgattggtcaaactcagattattgcaaatgg |
11834757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 11847901 - 11847944
Alignment:
| Q |
61 |
cttcttattaaacccttccctcaaaactcattttcatcaacaac |
104 |
Q |
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| T |
11847901 |
cttcttattaaacccttccctcaaaactcatttccatcaacaac |
11847944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 11834815 - 11834864
Alignment:
| Q |
365 |
attcaaggttctttaccaaaagaattaatgcaactcactgctttaactcg |
414 |
Q |
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| T |
11834815 |
attcaaggttctttaccaaaagaattgatgcaactcactgagttaactcg |
11834864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 11858952 - 11858911
Alignment:
| Q |
362 |
aatattcaaggttctttaccaaaagaattaatgcaactcact |
403 |
Q |
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| T |
11858952 |
aatattcaaggttctttaccaaaagaattggtgcaactcact |
11858911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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