View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_low_17 (Length: 462)
Name: NF15195_low_17
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_17 |
 | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 48837597 - 48837171
Alignment:
| Q |
19 |
agtccaagtctcactgaaattaccaagctgattttcttggctgttttgcttgaatgctgaaactatggacgttattcttgctattgagttaactcaagtg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48837597 |
agtccaggtctcactgaaattaccaagctgattttcttggccgttttgcttgaatgctgaaactatggacgttattcttgctattgagttaactcaagtg |
48837498 |
T |
|
| Q |
119 |
aaatgttggatccatctttggcttgaatataatccccaacttattaaattgacttttacacaatctaagattattccttgaaatttgttgacgttgatcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48837497 |
aaatgttggatccatctttggcttgaatataatccccaacttattaacttgacttttacacaatctaagattattccttgaaatttgttgacgttgatcc |
48837398 |
T |
|
| Q |
219 |
tattgcgaatattggtctctaatctcatttagtgggttaatatatccgaatctaaagatgattttcatcgtaatatgttaagtttaccttcatatagann |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48837397 |
tattgcgaatattggtctctaatctcatttagtgggttaatatatccgattctaaagatga-tttcatcgtaatatgttaagtttaccttcatatagatt |
48837299 |
T |
|
| Q |
319 |
nnnnnnngagacgatgattttagttattgtaaactctgcacttttttcctttcatcaaggttttactccattgggtattacatggtaagatttctaatga |
418 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48837298 |
ttgtt----gacgatgattttagttattgcaaactctgcacttttttcctttcatcaaggttttactccattgggtattacatggtaagatttctaatga |
48837203 |
T |
|
| Q |
419 |
ggcaaagtatttttaccattttgtgttgccta |
450 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
48837202 |
gacaaagtatttttaccattttgtgttgccta |
48837171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 29183 - 29261
Alignment:
| Q |
68 |
ttgaatgctgaaactatggacgttattcttgctattgagttaactcaagtgaaatgttggatccatctttggcttgaat |
146 |
Q |
| |
|
|||||| || ||| ||||| |||||||||||||||||||||| |||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
29183 |
ttgaatactaaaattatgggcgttattcttgctattgagttagctcatgagaaaggttggacccatctttggcttgaat |
29261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University