View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_19 (Length: 451)

Name: NF15195_low_19
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_19
NF15195_low_19
[»] chr2 (12 HSPs)
chr2 (19-292)||(35335754-35336026)
chr2 (57-328)||(35343092-35343363)
chr2 (59-283)||(35368411-35368637)
chr2 (28-278)||(35355898-35356157)
chr2 (28-279)||(35374525-35374784)
chr2 (89-283)||(35346337-35346530)
chr2 (28-283)||(35347809-35348078)
chr2 (97-292)||(35364639-35364835)
chr2 (97-283)||(35351412-35351603)
chr2 (333-437)||(35342022-35342126)
chr2 (97-267)||(35371816-35371983)
chr2 (166-278)||(35341070-35341188)
[»] chr7 (1 HSPs)
chr7 (374-428)||(23801276-23801330)
[»] chr4 (1 HSPs)
chr4 (376-417)||(7555470-7555511)
[»] chr1 (1 HSPs)
chr1 (391-424)||(26801066-26801099)
[»] chr5 (1 HSPs)
chr5 (375-415)||(36958219-36958259)
[»] chr3 (1 HSPs)
chr3 (376-416)||(16194531-16194571)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 35335754 - 35336026
Alignment:
Q  19 tgagttgatttgagttgtgtttgagttaggattggagagttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335754 tgagttgatttgagttgtgtttgagttaggattggagagttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaag 35335853  T
Q  119 tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcagcttaaa 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |    
T  35335854 tgtgtgtgtttgcttaaggtgtgagcatggctcggtgcctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattcaacttaca 35335953  T
Q  219 tgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatatattgtttggg 292  Q
     |||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||    
T  35335954 cgttggaaa-agaagcaaagaatcaagaatattgacaaaataaaatgtttgagtggatgcatataatggttggg 35336026  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 57 - 328
Target Start/End: Complemental strand, 35343363 - 35343092
Alignment:
Q  57 gttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgc 156  Q
    ||||||||||||||||||| ||  ||||||| | ||| | |||||  ||||||| || ||||||||| ||||| |||||| ||||||| | |||  ||||    
T  35343363 gttatatataactagaagagaacttgttgagttattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagctttgctacgtgc 35343264  T
Q  157 ctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa 256  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35343263 ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa 35343164  T
Q  257 aatagaatgtttgagtggatgcatatattgtttgggtgaattcatttagcaaggactttttattggttagtc 328  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  35343163 aatagaatgtttgagtggatgcatataatgtttgagtgaattcatttagctaggaatttttattggttagtc 35343092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 59 - 283
Target Start/End: Original strand, 35368411 - 35368637
Alignment:
Q  59 tatatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaa-gttgtgagcatggctcggtgc 156  Q
    ||||||||||||||||| ||| ||||| || ||||||| |||||||||||||| || ||||||||| ||||||||||| |   |||||||||||  ||||    
T  35368411 tatatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaaggaatgagcatggctacgtgc 35368510  T
Q  157 ctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa 256  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35368511 ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa 35368610  T
Q  257 aatagaatgtttgagtggatgcatata 283  Q
    |||||||||||||||||||||||||||    
T  35368611 aatagaatgtttgagtggatgcatata 35368637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 35355898 - 35356157
Alignment:
Q  28 ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaag 118  Q
    ||||||||||||||||||||||||||||||||        ||||||||| | ||||   | ||||| || ||||||| |||||| ||||||| || ||||    
T  35355898 ttgagttgtgtttgagttaggattggagagtttgtgtgttatatataacaaaaagagt-gttgttggagttgttctaacacaagtaaaccacacaagaag 35355996  T
Q  119 tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttaca-attcagcttaa 217  Q
    ||||| |||||||||||| |||||||||  ||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||     
T  35355997 tgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttacacattcagcttac 35356096  T
Q  218 atgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgc 278  Q
    | ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35356097 acgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgc 35356157  T

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Target: chr2; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 35374525 - 35374784
Alignment:
Q  28 ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttg-agctgttctagcacaagcaaaccacgcaggaag 118  Q
    ||||| ||||||||||||||||||||||||||        ||||||||| | ||||   | ||||| || ||||||| |||||||||||||| || ||||    
T  35374525 ttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaaaaagagttgttgttggagttgttctaacacaagcaaaccacacaagaag 35374624  T
Q  119 tgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaattgtctttacaattcagcttaaa 218  Q
    ||||| |||||||||||| |||||||||  ||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||| || |    
T  35374625 tgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttac-attcagcataca 35374723  T
Q  219 tgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgca 279  Q
     ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35374724 cgttggaaatagcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgca 35374784  T

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Target: chr2; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 89 - 283
Target Start/End: Original strand, 35346337 - 35346530
Alignment:
Q  89 tgttctagcacaagcaaaccacgcaggaagtgt--gtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagcca 186  Q
    ||||||| |||||| ||||||| || |||||||  ||||||||||||||| ||||||||||||||| |||||||||||  ||||| ||||||||||||||    
T  35346337 tgttctatcacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagcca 35346436  T
Q  187 cattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata 283  Q
    |||||||||||||||||||||||||||||| | ||||||||  |||| | |||||||||||||   || ||||||||||||||||||||||||||||    
T  35346437 cattggcaattgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata---accaaatagaatgtttgagtggatgcatata 35346530  T

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Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 35348078 - 35347809
Alignment:
Q  28 ttgagttgtgtttgagttaggattggagagtt--------atatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagt 119  Q
    ||||| ||||||||||||||||||||||||||        ||||||||| |||||| ||| |||||||  |||||| |||||||||||||| || |||||    
T  35348078 ttgagctgtgtttgagttaggattggagagtttgtgtgttatatataacaagaagagaagttgttgagtagttctaacacaagcaaaccacacaagaagt 35347979  T
Q  120 gtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtcta--atggcatcttgtgcagccacattggcaattgtctttacaattcagcttaa 217  Q
    ||||  ||||||||||| | |||||||||||  |||||||||||| ||  ||||  |||||||||||||||||||||||||||| ||||||||||| ||     
T  35347978 gtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatatggggtcttgtgcagccacattggcaattgtctctacaattcagcatat 35347879  T
Q  218 at----gt-tggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata 283  Q
    ||    || |||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35347878 atacacgtatggaaa-agaagcaaagactcaagaatattgacaaaatagaatgtttgagtggatgcatata 35347809  T

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Target: chr2; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 97 - 292
Target Start/End: Original strand, 35364639 - 35364835
Alignment:
Q  97 cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat 196  Q
    |||||| ||||||| || ||||||||| |||||||||||| ||||||||||||||  ||| ||||||| |||||| |||||||||||||||||||||| |    
T  35364639 cacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggcatt 35364738  T
Q  197 tgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaa-tgtttgagtggatgcatatattgtttggg 292  Q
    ||||||||||||||||| || ||||||| || || || ||||||||||||||| ||  |||||| || | ||| |||||||||||||| || |||||    
T  35364739 tgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaaatataatttttttagtggatgcatataatggttggg 35364835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 35351412 - 35351603
Alignment:
Q  97 cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat 196  Q
    ||||||||||||| ||||||||||||| | |||||| ||| |||||||||||||  ||||  |||||| |||||| ||||||||||||||||||||||||    
T  35351412 cacaagcaaaccatgcaggaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggcaat 35351511  T
Q  197 tgtctttacaattcagcttaaatgttggaaatagcag-----taaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata 283  Q
    ||| |||| || ||||| |  | |||||||  |||||     |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  35351512 tgtttttataagtcagcatgcacgttggaagaagcagcaaattaaagaatcaagaatattgaaaaaatcgaatgtttgagtggatgcatata 35351603  T

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Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 35342126 - 35342022
Alignment:
Q  333 gctgttaaaataacttgnnnnnnntgaagaaaaatattgtggtcaaatatctctcatagtcctttaaattagatgtttataacaagttaattttttgaag 432  Q
    |||||||||||||||||       |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  35342126 gctgttaaaataacttgaaaaaaatgaagaaaaaaattgtggtcaaatatctcttatggtcctttaaattagatgtttataataagttaattttttgaag 35342027  T
Q  433 ttttt 437  Q
    |||||    
T  35342026 ttttt 35342022  T

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Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 35371816 - 35371983
Alignment:
Q  97 cacaagcaaaccacgcaggaagtgtgtgtgtttgcttaagttgtgagcatggctcggtgcctgcatgtctaatggcatcttgtgcagccacattggcaat 196  Q
    |||||| ||||||| || ||||||||| |||||||||||| ||||||||||||||  ||| | ||||| |||||| ||||||||||||  |||||||| |    
T  35371816 cacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatcttgtgcagcatcattggcatt 35371915  T
Q  197 tgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtt 267  Q
    | |||||||||||||||||| | ||||  || ||||  |||||||||||||   |||| ||||||||||||    
T  35371916 tctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaatagaatgtt 35371983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 35341070 - 35341188
Alignment:
Q  166 taatggcatcttgtgcagccacattggcaa--ttgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaat----attgacaaaat 259  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||| || | |||||||  ||||| | ||| ||||||||    |||||||||||    
T  35341070 taatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaat 35341169  T
Q  260 agaatgtttgagtggatgc 278  Q
    |||||||||||||||||||    
T  35341170 agaatgtttgagtggatgc 35341188  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 23801276 - 23801330
Alignment:
Q  374 gtcaaatatctctcatagtcctttaaattagatgtttataacaagttaatttttt 428  Q
    |||||||||| | ||| ||| ||||| ||||||||||||||||||||||| ||||    
T  23801276 gtcaaatatcacacatggtcttttaagttagatgtttataacaagttaatctttt 23801330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 7555470 - 7555511
Alignment:
Q  376 caaatatctctcatagtcctttaaattagatgtttataacaa 417  Q
    ||||||||||||  |||||||||| |||||||||||||||||    
T  7555470 caaatatctctcgcagtcctttaagttagatgtttataacaa 7555511  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 26801066 - 26801099
Alignment:
Q  391 gtcctttaaattagatgtttataacaagttaatt 424  Q
    ||||||||| ||||||||||||||||||||||||    
T  26801066 gtcctttaagttagatgtttataacaagttaatt 26801099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 36958219 - 36958259
Alignment:
Q  375 tcaaatatctctcatagtcctttaaattagatgtttataac 415  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  36958219 tcaaatatctcccatagtcctctaaattagatgtttgtaac 36958259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 16194571 - 16194531
Alignment:
Q  376 caaatatctctcatagtcctttaaattagatgtttataaca 416  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  16194571 caaatatctctcgtggtcctttaaattatatgtttataaca 16194531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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