View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_20 (Length: 450)
Name: NF15195_low_20
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 19351356 - 19351791
Alignment:
| Q |
1 |
aacggaagatcttcacaatctccgattccgaagcgaatacggatgatcgacataacggacaggtttgattcgacgataaccaagcgtcaatgcattcagt |
100 |
Q |
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| T |
19351356 |
aacggaaaatcttcataatctccgattccgaagcgaatacggatgatcgacataacggacaggtttgattcgacgataaccaagcgtcaatgcattccgt |
19351455 |
T |
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| Q |
101 |
atgaaatgcgtgacagcagagaggaagaagacggaggagatcgttttgctcgaactttgataaacaaacggcgcagtcgccggagacgacggtggaggaa |
200 |
Q |
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| T |
19351456 |
gtggaatgcgtgacagcagagaggaagaagacggaggagatcgttttgctcgaactttgataagcaaacggcacagtcgccggagacaacggtggaggaa |
19351555 |
T |
|
| Q |
201 |
cggcgtttgatggatgagaaggtgaaaatcgggagagaatcaacgacagaagttgtagtggacgaagtagtggtgaccggagaaactctaacagtggagg |
300 |
Q |
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| T |
19351556 |
cggcgtttgatggatgagaaggtgaaaatcgggagagaatcaacgacggaagatgaagtggacgaagtcgtggtgaccggagaaactctaaaaatggagg |
19351655 |
T |
|
| Q |
301 |
aggatgacggagagaaacggcgacgacggaggatgaagtagagaatgaagaaaacagtgacggtaacggcgaaaacggttacggttatgaaaaggttgtg |
400 |
Q |
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| T |
19351656 |
aggatgacggagagaaacggcgacgacggaggatgaagtagagaatgaagaaaacggtgacggtaacggcgaaaacggttacggttatgaaaaggttgtg |
19351755 |
T |
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| Q |
401 |
tgaggaatttgtgtttcccattttcacgttgtgtgt |
436 |
Q |
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| T |
19351756 |
tgaggaatttgtgtttcccattttcacgttgtgtgt |
19351791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 427079 - 427000
Alignment:
| Q |
43 |
atgatcgacataacggacaggtttgattcgacgataaccaagcgtcaatgcattcagtatgaaatgcgtgacagcagaga |
122 |
Q |
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| T |
427079 |
atgatcgacataacggacaggtttgattcaatgctaaccaagcgtcgatgcattccgtatggaacgtgtgacagcagaga |
427000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 426793 - 426914
Alignment:
| Q |
1 |
aacggaagatcttcacaatctccgattccgaagcgaatacggatgatcgacataacggacaggtttgattcgacgataaccaagcgtcaatgcattcagt |
100 |
Q |
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| T |
426793 |
aacggaaaatcttcataatctcttattctgattcgaatactgatgatcgacataaaaaacaggtttgattcgatgctaactaagcgtacatgcattccgt |
426892 |
T |
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| Q |
101 |
atgaaatgcgtgacagcagaga |
122 |
Q |
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||| ||| |||||| ||||||| |
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| T |
426893 |
atggaatccgtgactgcagaga |
426914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 15563504 - 15563553
Alignment:
| Q |
24 |
gattccgaagcgaatacggatgatcgacataacggacaggtttgattcga |
73 |
Q |
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| T |
15563504 |
gattccgatgcgaatactgatgatcaacataacagacaagtttgattcga |
15563553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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