View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_low_21 (Length: 444)
Name: NF15195_low_21
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 4064396 - 4063979
Alignment:
| Q |
10 |
tccaagaatatgaatatatctctgtaatgctgaagtacttaaatcaaatatattttggtttggaatccaaactttgattgctacatgtatttctgctccc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064396 |
tccatgaatatgaatatatctctgtaatgctgaagtacttaaatcaaatatatttttgtttggaatccaaactttgattgctacatgtatttctgctccc |
4064297 |
T |
|
| Q |
110 |
gccctttgtctccttcctttttattttagtattctttctcatgtttatagcattnnnnnnnn-gtgcatggtatgaatgagctatatagctttagtctcc |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4064296 |
gccctttgtctccttcctttt-attttagtattctttctcatgtttatagcattaaaaaaaaagtgcatggtatgaatgagctacatagctttagtctcc |
4064198 |
T |
|
| Q |
209 |
atatctttttattcgtactcagcttctgataaaatgcatttttctgcttgtagttgcaacaaaagttgtgttcctttgtcgagcaataaataaattgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064197 |
atatctttttattcgtactcagcttctgataaaatgcatttttctgcttgtagttgcaacaaaagttgtgttcctttgtcgagcaataaataaattgtct |
4064098 |
T |
|
| Q |
309 |
gcgaggctaacgaggagatcatcagagtccacacaaccacaacagtcatcctcatcatctgtattactccaaaattgattcttaaattacaattaattgc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4064097 |
gcgaggctaacgaggagatcatcagagtccacacaaccacaacagtcatcctcatcatctgtattactccaaaattgattcttaaattacaattagttgc |
4063998 |
T |
|
| Q |
409 |
aggaattgttgttgtatgg |
427 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4063997 |
aggaattgttgttgtatgg |
4063979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 4058042 - 4057976
Alignment:
| Q |
78 |
aaactttgattgctacatgtatttctgctcccgccctttgtctccttcctttttattttagtattctt |
145 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
4058042 |
aaactttgattgcgacgtgtatttctgctcccacccttggtctccttcc-ttttgttttagtattctt |
4057976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 4057926 - 4057882
Alignment:
| Q |
246 |
atttttctgcttgtagttgcaacaaaagttgtgttcctttgtcga |
290 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
4057926 |
atttttctgcttgtagatgcaaacaaagttgtgttccttcgtcga |
4057882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University