View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_low_25 (Length: 403)
Name: NF15195_low_25
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_25 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 41244358 - 41243968
Alignment:
| Q |
17 |
acatcaaccctgtgcttttgcctaagaagactgaaaggtctaa---tgttagcaaggaaccgaagtctcccaagcctaaggctggaaaatctccaaagaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244358 |
acatcaaccctgtgcttttgcctaagaagactgaaaggtctaacactgttagcaaggaaccgaagtctcccaagcctaaggctggaaaatctccaaagaa |
41244259 |
T |
|
| Q |
114 |
ggcttagatttaggtttcttatggttgatgtttattttgtgtgtataattccgctttaggttggtgttttgtaactggaaggtgtaatgcgtttgaagtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244258 |
ggcttagatttaggtttcttatggttgatgtttattttgtgtgtataattccgctttaggttggtgttttgtaactggaaggtgtaatgcgtttgaagtg |
41244159 |
T |
|
| Q |
214 |
gtgtaatttggaagcctctggcttct-ttttagtgttaatgtgaactttcagtagagataatatttggctgaaattgtctatggagtttgattacaatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41244158 |
atgtaatttggaagcctctggcttcttttttagtattaatgtgaactttcagtagaaataatatttggcttaaattgtctatggagtttgattacaatgt |
41244059 |
T |
|
| Q |
313 |
gtattacgttagtgtagtattctttaattttgttcttacaatagttgtatcaagctcaatgaatgatgcttttagaaaactgggtaatgtt |
403 |
Q |
| |
|
|||| ||||| ||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
41244058 |
gtatgacgtttgtgtagttttctttacttttgttctcacaatagttgtttcaagctcaatgaatgatgctgttagaaaattgggtaatgtt |
41243968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University