View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_26 (Length: 389)
Name: NF15195_low_26
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 10812914 - 10813283
Alignment:
| Q |
14 |
acttatgaagttgtgttcgatcaagaatcatgagacataagtnnnnnnnnnnnnnnnnctaaatattcttctatactatgttaaaatcgtataaattggg |
113 |
Q |
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| T |
10812914 |
acttatgaagttgtgttcgatcaagaatcatgtgacataagtaaaaaataaaaatcaactaaatatacttctatactatgttaaaatcgtataaattggg |
10813013 |
T |
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| Q |
114 |
tgcagaagtttgaccaagataatctacacacactctgccatcgttatttcacacacacaaataaacctataggtata----tctatggttaagaatctct |
209 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
10813014 |
tgcagaagtttgaccaagataatctacacac--tctgccatcgttatttcacacacacaaataaacctataggtataattatatatggttaagaatctct |
10813111 |
T |
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| Q |
210 |
taaaaaatataaaataaagaattctaccataaggtcccaaaaagaaggacaacccaacaaaaacaagaaaattcaaattccatctctaaagtttcacctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10813112 |
taaaaaatataaaataaagaattctaccataaggtcccaaaaagaaggacaacccaacaaaaacaagaaaattcaaattccatctctaaagtttcacctt |
10813211 |
T |
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| Q |
310 |
atgtgtgcatatcatgttctcaattcctctctttgaaatattaatcgtcatagtacaattcatcttcatctc |
381 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10813212 |
atgtgtgcatgtcatgttctcaattcctctctttgaaatattaatcgtcatagtacaattcatcttcatctc |
10813283 |
T |
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