View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_28 (Length: 382)
Name: NF15195_low_28
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 40421865 - 40421512
Alignment:
| Q |
17 |
aaaaggttcatgttataccaccaaggttgttatgctggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgtcctcg |
116 |
Q |
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| T |
40421865 |
aaaaggttcatgttataccaccaaggttgttatgctggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgtcctcg |
40421766 |
T |
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| Q |
117 |
tcgtgtgttctgaaataactgttgttacttttcgtgggcccaatgaaacacacttggattccttagttggacaagcactttttggtgatggtgcttcgtc |
216 |
Q |
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| T |
40421765 |
ttgtgtgttctgaaataactgttgttacttttcgtgggcccaatgaaacacacttggattctttagttggacaagcactttttggtgatggtgcttcgtc |
40421666 |
T |
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| Q |
217 |
tgtgatcgttggatcaaatcccgacacaacacttgaacgtcccttatttcatcttgtttctgcttctgaaacgattctaccaaattctgaaggtacaaat |
316 |
Q |
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| T |
40421665 |
tgtgatcgttggatcaaatcccaacacaacacttgaacgtccattatttcatcttgtttctgcttctgaaacgattctaccaaactctgaaggtacaaat |
40421566 |
T |
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| Q |
317 |
ttatttttggtacaccgaaaattttaggtatatcatagaatttgccttaatatt |
370 |
Q |
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| T |
40421565 |
ttatttttggtacaccgaaaattttaagtataccatagaatttgtcttaatatt |
40421512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 5302671 - 5302765
Alignment:
| Q |
17 |
aaaaggttcatgttataccaccaaggttgttatgctggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgt |
111 |
Q |
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||||||| |||| | ||||| ||||| |||| ||| ||||| || || |||||| | |||||||||||||||||||| |||| ||||| ||||| |
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| T |
5302671 |
aaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgt |
5302765 |
T |
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