View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_3 (Length: 599)
Name: NF15195_low_3
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 261 - 579
Target Start/End: Original strand, 38341522 - 38341840
Alignment:
| Q |
261 |
agccactgatttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccgtca |
360 |
Q |
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| T |
38341522 |
agccactgatttcttctttgaactcgtcgatgctcttttcatattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccatca |
38341621 |
T |
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| Q |
361 |
aactcataaggagggtcgaggacatcatcaacctcaacagccttgttaaatgggtttttagacagttctcgaactgcttgttttctcggctgccttgagg |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38341622 |
aactcataaggagggtcgaggacatcatcaacctcaacagccttgttaaatgggtttttagacagttcacgaactgcttgttttctcggctgccttgagg |
38341721 |
T |
|
| Q |
461 |
ctttactacctttatcctccacaccaacaataggagatcttttatgcttctttagaggnnnnnnnctcccgttagcattctgagaaagattgcaaataaa |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38341722 |
ttttactacctttatcctccacaccaacaataggagatcttttatgcttctttagaggtttttttctcccgttagcattctgagaaagattgcaaataaa |
38341821 |
T |
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| Q |
561 |
atgatgtattgttaagaac |
579 |
Q |
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| T |
38341822 |
atgatgtattgttaagaac |
38341840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 38341259 - 38341488
Alignment:
| Q |
15 |
aataatatctcgaagaggtaacgttcgatgatcaagataatcatcttccagcagagccttgtccact-----------------ttcagaataagtatgt |
97 |
Q |
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| T |
38341259 |
aataatatctcgaagaggtaatgttcgatgatcaagataatcatcttccagcagagccttgtccactatgaaaatgaaaatactttcagaataagtatgt |
38341358 |
T |
|
| Q |
98 |
aaaatataataatcatggacaacagttaaaaaattgcctgataagtttaccacatctttttcttcgccgagatgaatgcgggaactttttaggaggttct |
197 |
Q |
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| T |
38341359 |
aaaatataataatcatggacaacagttaaaaaaatgcctgataagtttaccacatctttttcttcgccgagatgaatgcgggaactttttaggaggttct |
38341458 |
T |
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| Q |
198 |
tcagtacccttttctaaatcatcattagcc |
227 |
Q |
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| T |
38341459 |
tcagtacccttttctaaatcatcattagcc |
38341488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 261 - 517
Target Start/End: Original strand, 38333769 - 38334025
Alignment:
| Q |
261 |
agccactgatttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaagtacatctccgtca |
360 |
Q |
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| T |
38333769 |
agccactgatttcttctttgaacttgttgatgcgcttgtcttcttggatgaataatccacgtcgtcatcatcgtcattttcttcaagttcatctccatca |
38333868 |
T |
|
| Q |
361 |
aactcataaggagggtcgaggacatcatcaacctcaacagccttgttaaatgggtttttagacagttctcgaactgcttgttttctcggctgccttgagg |
460 |
Q |
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| T |
38333869 |
ataacataaggagggtcgaggacatcatcaccgttaacagcctcattcaatgagtttttagtaggtttactagctgcttgttttcttggtttccttgagg |
38333968 |
T |
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| Q |
461 |
ctttactacctttatcctccacaccaacaataggagatcttttatgcttctttagag |
517 |
Q |
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||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||| |
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| T |
38333969 |
atttaccacctttatcctccacaccagcaatagaagatattttatgcttctttagag |
38334025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 38333588 - 38333736
Alignment:
| Q |
79 |
actttcagaataagtatgtaaaatataataatcatggacaacagttaaaaaattgcctgataagtttaccacatctttttcttcgccgagatgaatgcgg |
178 |
Q |
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||||||| |||||| || ||| ||||||| ||||| ||||| |||||||| || | ||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
38333588 |
actttcacaataagcatataatatataatcatcatagacaatagttaaaatatagtttgacaagtttaccacatctttttcttcgccgagatgcatgggg |
38333687 |
T |
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| Q |
179 |
gaactttttaggaggttcttcagtacccttttctaaatcatcattagcc |
227 |
Q |
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| T |
38333688 |
gaactttttaggaggttcttcagtaaccttttctgaatcatcattagcc |
38333736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 38333507 - 38333573
Alignment:
| Q |
15 |
aataatatctcgaagaggtaacgttcgatgatcaagataatcatcttccagcagagccttgtccact |
81 |
Q |
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||||||||| | || ||||| ||||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
38333507 |
aataatatccctaataggtattgttcgttgatcaagatagtcattttccagcagagccttgtccact |
38333573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 25379419 - 25379342
Alignment:
| Q |
269 |
atttcttctttgaactcgtcgatgctcttttcttattgaatgaataatccacttcgtcctcatcatcgttttcttcaa |
346 |
Q |
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||||||| |||||| | || ||||||||||||| || |||||| ||||||||||||||| ||||| |||||||||| |
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| T |
25379419 |
atttcttttttgaatttgttaatgctcttttcttcttagatgaattatccacttcgtcctcgtcatcattttcttcaa |
25379342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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