View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_30 (Length: 361)
Name: NF15195_low_30
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 80 - 345
Target Start/End: Original strand, 941786 - 942051
Alignment:
| Q |
80 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
179 |
Q |
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| T |
941786 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
941885 |
T |
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| Q |
180 |
ttgacatactagtcctttttcactaactctcgaattcttcgaaccaaaaaatgttctcactaaggttattaaaaccctaatccatgcaagaataagaata |
279 |
Q |
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| T |
941886 |
ttgacatactagtcctttttcactaactctcgaattcttcgaaccaaaaaatgttctcactaaggttattaaaaccctaatccatgcaagaataagaata |
941985 |
T |
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| Q |
280 |
acattgaggcaaacaattagaagaaattaatcaagattctctaatgagtctttaaaatttattttg |
345 |
Q |
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| T |
941986 |
acattgaggcaaacaattagaagaaattaatcaagattctctaatgagtctttaaaatttattttg |
942051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 941699 - 941762
Alignment:
| Q |
1 |
acttcagaggtatcatcaactaagagatcttcaactcatccaaatgaatattgtgaaggatgag |
64 |
Q |
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| T |
941699 |
acttcagaggtatcatcaactaagagatcttcaactcatccaaatgaatattgtgaaggatgag |
941762 |
T |
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