View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_33 (Length: 335)

Name: NF15195_low_33
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_33
NF15195_low_33
[»] chr4 (9 HSPs)
chr4 (19-324)||(54304045-54304350)
chr4 (25-169)||(56208556-56208694)
chr4 (19-169)||(47293438-47293582)
chr4 (19-151)||(45876755-45876881)
chr4 (19-169)||(55705863-55706007)
chr4 (19-114)||(45858824-45858919)
chr4 (211-305)||(45878693-45878780)
chr4 (200-241)||(56208883-56208924)
chr4 (253-305)||(45860212-45860264)
[»] chr5 (3 HSPs)
chr5 (19-112)||(35854575-35854668)
chr5 (19-101)||(10521345-10521427)
chr5 (252-305)||(35802756-35802809)
[»] chr2 (1 HSPs)
chr2 (19-113)||(24357487-24357581)
[»] chr8 (2 HSPs)
chr8 (19-159)||(7961725-7961859)
chr8 (21-169)||(7972097-7972239)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 54304350 - 54304045
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54304350 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 54304251  T
Q  119 ccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaaggatctattatttggactaaaa-aaccaactaaggtaatattttctgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  54304250 ccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaagtatctattatttggactaaaagaaccaactaaggtaatattttctgc 54304151  T
Q  218 aacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggttttttcggcagcaagac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  54304150 aacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgatggg-tttttcggcagcaagac 54304052  T
Q  318 gtttcat 324  Q
    |||||||    
T  54304051 gtttcat 54304045  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 56208556 - 56208694
Alignment:
Q  25 gccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttccccctcc 124  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||  ||| || ||||| ||| |||      ||||||    
T  56208556 gccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaaa------ccctcc 56208649  T
Q  125 cctgtggaacctcttccattttgtctattgtcattgatttggaaa 169  Q
    |||||| |||||||||||| |  ||||| ||||||||| ||||||    
T  56208650 cctgtgcaacctcttccatctcatctatagtcattgatctggaaa 56208694  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 47293582 - 47293438
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 118  Q
    |||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||  |||||||||||  |||||||          
T  47293582 atattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaa------ 47293489  T
Q  119 ccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 169  Q
     ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  47293488 tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 47293438  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 45876755 - 45876881
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 118  Q
    ||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  | |||| ||| |||||||| |||||||          
T  45876755 atattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccggtccaaa------ 45876848  T
Q  119 ccctcccctgtggaacctcttccattttgtcta 151  Q
    ||||||| |||| |||||||||||| |||||||    
T  45876849 ccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 55706007 - 55705863
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 118  Q
    ||||| || ||||||||||  |||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||| ||||| |||||||          
T  55706007 atattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccggtccaaa------ 55705914  T
Q  119 ccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 169  Q
    ||||||| || | |||||||||||| |||||||| ||||| ||| ||||||    
T  55705913 ccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaa 55705863  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 45858824 - 45858919
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaacc 114  Q
    ||||||||||||||||| ||||||||||||||||| || | ||| |||||||||||||||| |||  |||||  ||| |||||||| |||||||||    
T  45858824 atattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaaacc 45858919  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 45878693 - 45878780
Alignment:
Q  211 tttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 305  Q
    |||||||||||||||||||||||||| |||| | |||       ||||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  45878693 tttctgcaacaatagctcctgctcccattgccatgta-------gtatcctccacttgctgccacatcagacattgaagcaatgactggtttttt 45878780  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 56208883 - 56208924
Alignment:
Q  200 taaggtaatattttctgcaacaatagctcctgctcccgttgc 241  Q
    |||||||| |||||||||||||||| ||||||||||| ||||    
T  56208883 taaggtaagattttctgcaacaataactcctgctcccattgc 56208924  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 45860212 - 45860264
Alignment:
Q  253 tagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 305  Q
    ||||||||| |||| | |||||||||||| |||||||||||||  ||||||||    
T  45860212 tagtatcctccactagctgccacatcagacattgaagcaatgattggtttttt 45860264  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 35854668 - 35854575
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaa 112  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||||||||| |||||||    
T  35854668 atattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccggtccaaa 35854575  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 10521427 - 10521345
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtcctt 101  Q
    ||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||||||    
T  10521427 atattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtcctt 10521345  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 35802756 - 35802809
Alignment:
Q  252 gtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 305  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  35802756 gtagtatcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttt 35802809  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 24357581 - 24357487
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaac 113  Q
    ||||||||||||||||||||||| |||||||| || || |  || ||||||||||||||||||||  | |||| ||| || ||||||||||||||    
T  24357581 atattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaaac 24357487  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 7961725 - 7961859
Alignment:
Q  19 atattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcc 118  Q
    ||||||||||||||||||||||||||||||||  | || || || ||||||||||| |||||| |   |||| |||| || |||||||||||||  ||      
T  7961725 atattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaaa--tt-- 7961820  T
Q  119 ccctcccctgtggaacctcttccattttgtctattgtcatt 159  Q
      ||||| |||| |||||||||||| |||||||| ||||||    
T  7961821 --ctcccttgtgcaacctcttccatcttgtctatagtcatt 7961859  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 7972097 - 7972239
Alignment:
Q  21 attggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaaaccttcccc 120  Q
    ||||||||||||||||||||||||||||||||| || |  || |  |||||||| ||||||||   ||||  ||| || ||||| |||||||       |    
T  7972097 attggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccggtccaaa------tc 7972190  T
Q  121 ctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 169  Q
    |||| ||||| |||||||||||| |||||||  ||||||||| ||||||    
T  7972191 ctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaa 7972239  T

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