View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_low_34 (Length: 335)
Name: NF15195_low_34
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 20223611 - 20223298
Alignment:
| Q |
15 |
aacacaaacattatccacgtgtcaccttctaccacctttctttgtatcagtgtaaccgccgttttaccttctataaacgtcaaaagaaacccctaaacga |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20223611 |
aacataaacattatccacgtgtcaccttctaccacctttctgtgtatcagtgtaaccgccgttttacct-ctataaacgtcaaaagaaacccctaaacga |
20223513 |
T |
|
| Q |
115 |
cagaacaacaatatattcaattcatgaaaa-ttcttacaaccatggaaatggaaactccttgttcaactctatcatgggaagttctcatcctcgtagcac |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20223512 |
cagaacaa---tatattcaattcatgaaaaattcttacaaccatggaaatggaaactccttgttcaactctatcatgggaagttctcatcctcgtagcac |
20223416 |
T |
|
| Q |
214 |
atcaccttgaccctaaaacattagccatagcttcatgcgtatcaaaatcatggttacattctatgtcctctgatcttctttggaaaccaatcgtaacaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20223415 |
atcaccttgaccctaaaacattagccatagcttcatgcgtatcaaaatcatggttacattctatgtcctctgatcttctttggaaaccaatcgtaacaac |
20223316 |
T |
|
| Q |
314 |
ccattttccctctctctc |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20223315 |
ccattttccctctctctc |
20223298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University