View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_36 (Length: 312)

Name: NF15195_low_36
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_36
NF15195_low_36
[»] chr1 (1 HSPs)
chr1 (17-312)||(52874479-52874774)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 52874774 - 52874479
Alignment:
Q  17 atatagaaggtagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52874774 atatagaaggtagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacact 52874675  T
Q  117 agttaaatgaaagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52874674 agttaaatgaaagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataa 52874575  T
Q  217 ggttacatgaaaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52874574 ggttacatgaaaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactg 52874479  T

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