View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_4 (Length: 591)

Name: NF15195_low_4
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_4
NF15195_low_4
[»] chr1 (14 HSPs)
chr1 (17-577)||(12884992-12885557)
chr1 (331-577)||(12921789-12922035)
chr1 (331-577)||(12956024-12956271)
chr1 (353-577)||(12914491-12914715)
chr1 (360-577)||(12950268-12950485)
chr1 (360-577)||(12942610-12942827)
chr1 (312-577)||(12992244-12992510)
chr1 (403-553)||(12893672-12893822)
chr1 (405-541)||(12997910-12998045)
chr1 (170-284)||(12992560-12992675)
chr1 (168-245)||(12914294-12914371)
chr1 (336-439)||(13000911-13001015)
chr1 (181-282)||(12942932-12943033)
chr1 (90-163)||(12921559-12921632)
[»] chr8 (5 HSPs)
chr8 (216-276)||(14071072-14071132)
chr8 (216-276)||(14073859-14073919)
chr8 (184-276)||(14069500-14069593)
chr8 (486-571)||(14073726-14073811)
chr8 (523-571)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 12884992 - 12885557
Alignment:
Q  17 caagtaagtcatattgtctaagaaatcatcataaatatta-aagagacaaaaacaaaccaaagggagnnnnnnntcatcaaacaattcctttaactaata 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  12884992 caagtaagtcatattgtctaagaaatcatcataaatattataagagacaaaaacaaaccaaagggagaaaaaaatcatcaaacaattcctttaactaata 12885091  T
Q  116 gtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaaca----atcatagagaaaaaatccaaaggttga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||    
T  12885092 gtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaacaaacaatcatagagaaaaaatccaaaggctga 12885191  T
Q  212 catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885192 catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagt 12885291  T
Q  312 tagtatcttaaagaacaatagaacaaacaactaatgggttcttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaa 411  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885292 tagtatcttaaagaacaacacaacaaacaactaatgggttcttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaa 12885391  T
Q  412 gtatctccaatctccactttgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaacc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885392 gtatctccaatctccactttgcattcttccataaattttctccatcctttattgaacctccagccatgaacactctcataataattgacttttacgaacc 12885491  T
Q  512 atgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttg 577  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  12885492 atgactttcttcccattttcaactccacaatattttcattacttccttttttcataaactcctttg 12885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 331 - 577
Target Start/End: Original strand, 12921789 - 12922035
Alignment:
Q  331 agaacaaacaactaatgggttcttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactt 430  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  12921789 agaacaaacaactaatggattcatcctataactgaaacatcaaacacaaattttctctcatcaattaacttaaagagacaagtatctccgatctccactt 12921888  T
Q  431 tgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccatttt 530  Q
    ||||| ||| ||| ||||||||||| |||||||| ||||| ||||   |||||||||| |||||||||||||||||||||||||||| ||  |||| |||    
T  12921889 tgcatgctttcatgaattttctccaacctttactaaacctgcagctccgaacactctcgtaataattgacttttacgaaccatgactgtccccccacttt 12921988  T
Q  531 caactccacaatattttcatgacttctatttttcataaactcctttg 577  Q
    |||||||| |||||||||||||||||     ||||||||||||||||    
T  12921989 caactccaaaatattttcatgacttcctccgttcataaactcctttg 12922035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 331 - 577
Target Start/End: Complemental strand, 12956271 - 12956024
Alignment:
Q  331 agaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccact 429  Q
    |||||||||| ||||||| ||||| |||  ||||||||||||||||||||||||||  ||||| || |  |||| |||||||||||||||||||||||||    
T  12956271 agaacaaacagctaatggattctttcctgcaattgaaacatcaaacacaaattttcgttcatcaatcaacttaaggagacaagtatctccaatctccact 12956172  T
Q  430 ttgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattt 529  Q
    |||||||||| ||| || |||||||| |||||||||||||| ||||||  || |||||| ||||| || ||||||||||||||||||||||| |||||||    
T  12956171 ttgcattctttcatgaactttctccaacctttactgaacctacagccacaaatactctcgtaatagttcacttttacgaaccatgactttctccccattt 12956072  T
Q  530 tcaactccacaatattttcatgacttctatttttcataaactcctttg 577  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||    
T  12956071 tcaactccacaatattttcatgacatcctcttttcataaactcctttg 12956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 353 - 577
Target Start/End: Original strand, 12914491 - 12914715
Alignment:
Q  353 ttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgcattcttccataaattttct 452  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||  ||||| |||||||||||||||||||||||||||| | ||| |||||||| |||    
T  12914491 ttcctacaattgaaacatcaaacacaaatttcctctcatcaattaacttaaaaagacaagtatctccaatctccactttgcctgctttcataaattgtct 12914590  T
Q  453 ccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatga 552  Q
    ||| |||||||||||||| ||||||  || ||||  |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |    
T  12914591 ccaacctttactgaacctacagccacaaagactccgataaaaattgacttttacaaaccatgactttctccccattttcaactccacaatattttcatta 12914690  T
Q  553 cttctatttttcataaactcctttg 577  Q
    | ||  |||||||||||||||||||    
T  12914691 catccttttttcataaactcctttg 12914715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 360 - 577
Target Start/End: Complemental strand, 12950485 - 12950268
Alignment:
Q  360 aattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgcattcttccataaattttctccatcct 459  Q
    |||||||||||||||||||||||| || ||||| ||||   ||||||||||||| |||||||||| |||||||||| ||| |||||||||| |||||||     
T  12950485 aattgaaacatcaaacacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcatgctttcataaattttgtccatccc 12950386  T
Q  460 ttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctat 559  Q
    |||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||       
T  12950385 ttactgaatctgcagccatgaatactctcataataattgacttttacaaaccatgactttctccccatttttaactccacaatattttcattacatcctc 12950286  T
Q  560 ttttcataaactcctttg 577  Q
    ||||||||||||||||||    
T  12950285 ttttcataaactcctttg 12950268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 360 - 577
Target Start/End: Complemental strand, 12942827 - 12942610
Alignment:
Q  360 aattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgcattcttccataaattttctccatcct 459  Q
    ||||||||||||||||| |||  |||||||||| || |  |||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||    
T  12942827 aattgaaacatcaaacaaaaaaattctctcatcaatcaacttaaagagacaaatatctccaatctccactttgcatgctttcataaattgtctccaacct 12942728  T
Q  460 ttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctat 559  Q
    |||| |||||| ||||||  || ||| |||||||| || ||||||||| ||||||||||||  ||||||||||| ||||| |||||||||| || ||       
T  12942727 ttaccgaacctacagccacaaatactatcataatagttcacttttacgtaccatgactttccccccattttcaattccacgatattttcattacatcccc 12942628  T
Q  560 ttttcataaactcctttg 577  Q
    ||||||||||||||||||    
T  12942627 ttttcataaactcctttg 12942610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 312 - 577
Target Start/End: Complemental strand, 12992510 - 12992244
Alignment:
Q  312 tagtatcttaaagaacaatagaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagaca 410  Q
    ||||| |||||||||||||||||||| || |||| || || || |||| ||||||||||||||||||||| || |||||||| || |  |||||||||      
T  12992510 tagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaag 12992411  T
Q  411 agtatctccaatctccactttgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaac 510  Q
    |||||||||||||||||||||||||||||  || |||| |||||| |||  |  ||| ||  | ||||||| ||| ||||||||||| ||||||||  ||    
T  12992410 agtatctccaatctccactttgcattcttttatgaattgtctccaacctccagagaatctataaccatgaatactatcataataattcacttttacagac 12992311  T
Q  511 catgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttg 577  Q
    |||||   ||  |||||||||||||||| ||  |||||||||||||   ||||||||||||||||||    
T  12992310 catgatcgtccccccattttcaactccagaaagttttcatgacttcctcttttcataaactcctttg 12992244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 12893672 - 12893822
Alignment:
Q  403 aagagacaagtatctccaatctccactttgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgactt 502  Q
    ||||||||||||| ||||| || ||||||||| | ||||| ||| |||||||| ||||||| ||| || |||||| | | |||   ||||||||| ||||    
T  12893672 aagagacaagtatttccaaacttcactttgcaattttccacaaaatttctccaacctttaccgaatctacagccacggatactaggataataattcactt 12893771  T
Q  503 ttacgaaccatgactttcttcccattttcaactccacaatattttcatgac 553  Q
    ||| ||||||||| | | | || |||||||||||||||| |||||||||||    
T  12893772 ttatgaaccatgattgtatccctattttcaactccacaagattttcatgac 12893822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 541
Target Start/End: Complemental strand, 12998045 - 12997910
Alignment:
Q  405 gagacaagtatctccaatctccactttgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgactttt 504  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||| |||| ||||||||||||   || ||| ||| |||   ||||||| | ||||||    
T  12998045 gagacaagtatttccaatttccactttgctttcttccataaattttatccaacctttactgaacaaacaaccacgaatactaggataataaatcactttt 12997946  T
Q  505 acgaaccatgactttcttcccattttcaactccacaa 541  Q
    || |||||||| | ||  |||||||||||||||||||    
T  12997945 acaaaccatgattgtc-ccccattttcaactccacaa 12997910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 12992675 - 12992560
Alignment:
Q  170 aaaacattaccaacaatcatagagaaaaaatccaaaggttga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatg 268  Q
    |||||||||| |||||||||| || ||||||||||||||||| ||||||  | ||||||||||||| ||||| ||| ||||| |  | |||||||||| |    
T  12992675 aaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaag 12992576  T
Q  269 cttaaaattgtagagc 284  Q
    |||||||| |||||||    
T  12992575 cttaaaatcgtagagc 12992560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 12914294 - 12914371
Alignment:
Q  168 aaaaaacattaccaacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagat 245  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| |  ||||| || |||||||| ||||||    
T  12914294 aaaaaacattaccaacaatcatagaacaaaaatccaaaggttgacacgatacctcttaggttaaaatcaaatacagat 12914371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 13000911 - 13001015
Alignment:
Q  336 aaacaactaatgggttcttc-ctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgca 434  Q
    ||||| |||||||||||||  ||| ||||||||||| ||||||||||||| ||||||| || |  || |||||||||||||    |||||||||||||||    
T  13000911 aaacagctaatgggttcttttctacaattgaaacattaaacacaaattttttctcatcaatcaacttcaagagacaagtatggagaatctccactttgca 13001010  T
Q  435 ttctt 439  Q
    |||||    
T  13001011 ttctt 13001015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 12943033 - 12942932
Alignment:
Q  181 aacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgta 280  Q
    ||||||||||||  ||| |||| |||| |||||  || || ||||| ||||||||||| ||| ||||||| | |||||||||||| ||||||| ||||||    
T  12943033 aacaatcatagaacaaatatccgaaggctgacaatatacttcttaggttcaaatcaaatacaaatgtttacaataccaaaatacattgcttaatattgta 12942934  T
Q  281 ga 282  Q
    ||    
T  12942933 ga 12942932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 12921559 - 12921632
Alignment:
Q  90 tcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtt 163  Q
    |||||||||| ||| ||||| |||||||||||||||  |||| ||||| |||||| | ||||||| ||||||||    
T  12921559 tcatcaaacagttcttttaaataatagtaaaaaataacatatttgcatgtactaatatatcttcaagccttgtt 12921632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 14071132 - 14071072
Alignment:
Q  216 attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 276  Q
    ||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  14071132 attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat 14071072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 14073919 - 14073859
Alignment:
Q  216 attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 276  Q
    ||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  14073919 attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat 14073859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 14069593 - 14069500
Alignment:
Q  184 aatcatagagaaaaaatccaaaggttgac-atgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 276  Q
    |||||||||| |||||| ||||||||||| |  ||||| ||||||||||||| |||  || |||||||| ||| |||||| |||||||||||||    
T  14069593 aatcatagagcaaaaattcaaaggttgactaaaattctacttagattcaaattaaatgcaaatgtttattgtaacaaaatgcaatgcttaaaat 14069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 571
Target Start/End: Complemental strand, 14073811 - 14073726
Alignment:
Q  486 ctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaact 571  Q
    ||||||| | |||||||||||||||||||| | ||   |||||||||||| |||||||||||||| |  ||  |||||||||||||    
T  14073811 ctcataaaatttgacttttacgaaccatgattatccctccattttcaactacacaatattttcataagatccctttttcataaact 14073726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 571
Target Start/End: Complemental strand, 14069426 - 14069378
Alignment:
Q  523 cccattttcaactccacaatattttcatgacttctatttttcataaact 571  Q
    |||||||| |||||||||||||||||||||| ||   ||||||||||||    
T  14069426 cccattttgaactccacaatattttcatgacatccccttttcataaact 14069378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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