View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_41 (Length: 282)

Name: NF15195_low_41
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_41
NF15195_low_41
[»] chr1 (2 HSPs)
chr1 (10-102)||(28536945-28537037)
chr1 (10-96)||(35686850-35686936)
[»] chr6 (1 HSPs)
chr6 (25-102)||(7723059-7723136)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 28536945 - 28537037
Alignment:
Q  10 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28536945 attatactataaaggtatggaatgtaaatagaggatcaaagacataaatgcttccttgaacatattgcatttgtattttccataacttcatct 28537037  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 35686850 - 35686936
Alignment:
Q  10 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataact 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  35686850 attatactataaaggtatggaatataaatagaggatcaaagacataaatgcttccttaaacgtattgcatttgtattttccataact 35686936  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 7723059 - 7723136
Alignment:
Q  25 tatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 102  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||  |||||||||| |||||||||    
T  7723059 tatggaatataaatataggatcaaagacataaatgtttccttaaacatattgcattcatattttccatcacttcatct 7723136  T

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