View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_46 (Length: 262)
Name: NF15195_low_46
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 32908712 - 32908601
Alignment:
| Q |
16 |
aatataacattactatagaaaatttgtttaatcatatataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgata |
115 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32908712 |
aatataacattattataggaaatttgtttaatcatatataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgata |
32908613 |
T |
|
| Q |
116 |
atatattgtagt |
127 |
Q |
| |
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|||||||||||| |
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| T |
32908612 |
atatattgtagt |
32908601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 32908506 - 32908455
Alignment:
| Q |
191 |
gaaaggtagaattagaatgggaaaaagtcccccactcattcccatatatata |
242 |
Q |
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| T |
32908506 |
gaaaggtagaattagaatgggaaaaagtcccccactcattcccatatatata |
32908455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 49308262 - 49308195
Alignment:
| Q |
52 |
tataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgataatat |
119 |
Q |
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| T |
49308262 |
tataattagaataatgaaagatccaactcaaaatcatgtatttcctttatatatttataagataatat |
49308195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 32639962 - 32640064
Alignment:
| Q |
16 |
aatataacattactatagaaaa-tttgtttaatcatatataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgat |
114 |
Q |
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|||||||||||| ||||||||| ||| ||||| | || ||||| ||||||||||| || || ||| |||||| ||| ||||||||||| ||||| ||| |
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| T |
32639962 |
aatataacattattatagaaaaatttatttaa--agatgtaatttgaataatgaaaaattcaacctgaaatctcttatctcctttatatatttttaagat |
32640059 |
T |
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| Q |
115 |
aatat |
119 |
Q |
| |
|
||||| |
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|
| T |
32640060 |
aatat |
32640064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 2292869 - 2292802
Alignment:
| Q |
52 |
tataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgataatat |
119 |
Q |
| |
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||||||| ||||||||||| ||||| | |||||||| ||||||||||||||| ||||| | |||||| |
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|
| T |
2292869 |
tataattagaataatgaaaaatccaactcaaaatcttctatttcctttatatatttttaagttaatat |
2292802 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 42561000 - 42561101
Alignment:
| Q |
16 |
aatataacattactatag-aaaatttgtttaatcatatataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgat |
114 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| | |||||||||||||| ||||| ||| |
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| T |
42561000 |
aatataacattattatagaaaaatttgtttaa--gggtataattggaataatgaaaaatccaatccaaaatc-tccatttcctttatatatttttaagat |
42561096 |
T |
|
| Q |
115 |
aatat |
119 |
Q |
| |
|
||||| |
|
|
| T |
42561097 |
aatat |
42561101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 5357347 - 5357279
Alignment:
| Q |
51 |
atataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgataatat |
119 |
Q |
| |
|
|||||||||||||||| ||| ||||| || ||||| | ||||||||||||||| ||| | |||||||| |
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|
| T |
5357347 |
atataattggaataataaaaaatccaacccaaaatatcatatttcctttatatattttcaagataatat |
5357279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 16241582 - 16241646
Alignment:
| Q |
52 |
tataattggaataatgaaagatccagcctaaaatcttgtatttcctttatataattttatgataa |
116 |
Q |
| |
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|||| |||||||||||||| || | || |||||||| ||||||||||||||| ||||| ||||| |
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| T |
16241582 |
tatagttggaataatgaaaaattaaacccaaaatcttatatttcctttatatatttttaagataa |
16241646 |
T |
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