View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_49 (Length: 246)
Name: NF15195_low_49
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 45312815 - 45312999
Alignment:
| Q |
16 |
aatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttg |
115 |
Q |
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| T |
45312815 |
aatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttg |
45312914 |
T |
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| Q |
116 |
gctgaatatggtgtgcattggaatttcttcttcacgcttgctgctatctcaatccttacatccattattaacattcctccacaat |
200 |
Q |
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| T |
45312915 |
gctgaatatggtgtgcattggaatttcttctttacgcttgctgctatctcaatccttacatcctttattaacattcctccacaat |
45312999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 27758540 - 27758687
Alignment:
| Q |
53 |
ttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
152 |
Q |
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| T |
27758540 |
ttgtctaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
27758639 |
T |
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| Q |
153 |
ttgctgctatctcaatccttacatccattattaacattcctccacaat |
200 |
Q |
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| T |
27758640 |
ttgctgctatctcgatccttacatccgttattaacattcctccacaat |
27758687 |
T |
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