View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_5 (Length: 569)
Name: NF15195_low_5
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 23 - 551
Target Start/End: Complemental strand, 42455497 - 42454968
Alignment:
| Q |
23 |
atacattgaaattagtgtagcaagttaaatgaaccaaagacacgtatagataagaggtctaccattcacatcacaacctcacgattatcgtgttatcgca |
122 |
Q |
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| T |
42455497 |
atacattgaaattagtgtagcaagttaaatgaaccaaagacacgtatagataagaggtctaccattcacatcacaacctcacgattatcgtgttatcgca |
42455398 |
T |
|
| Q |
123 |
ttgttgcacatttagacttatatgatttttataagtgctccatagacccgtcataatctcatgcatactgcccgacttgacacataagggcttatggcac |
222 |
Q |
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| T |
42455397 |
ttgttgcacatttagacttatatgatttttataagtgctccatagaccggtcataatctcatgcatactgcccgactttacacataagggcttatggcac |
42455298 |
T |
|
| Q |
223 |
ccgttgaaagcttgcatgcactataccataagaagatttatattatactagaagaatatatatacccagaactaaaataaactcatgagtaaaataaatc |
322 |
Q |
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| T |
42455297 |
ccgttgaaagcttgcatgcactataccataagaagatttatattatactagaagaatatatatacccagaactaaaataaactcatgagtaaaataaatc |
42455198 |
T |
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| Q |
323 |
acgatccaacatgggcaaac-agcaaagtgtaaacaataaaatgcttataatnnnnnnncttattatactgtaccaaaaaatgcttataatttcttaatt |
421 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42455197 |
acgatccaacatgggcaaacaagcaaagtgtaaacaataaaatgcttataataaaaaaacttattatactgtaccaaaaaatacttataatttcttaatt |
42455098 |
T |
|
| Q |
422 |
aaatctcacaactactctatcaaacaagctttaattaatttaaccaattatgattggtttgattgattaagagttgattcacacgtaaggttgcgagttc |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |
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| T |
42455097 |
aaatctcacaactactctatcaaacaagctttaattaatttaaccaattatgattggtttaattgattaagagttgactcacacgtaaggttgcaagttc |
42454998 |
T |
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| Q |
522 |
tactcctattatcagccgatatagtaacct |
551 |
Q |
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|||| |||||||||||||||||| |||||| |
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| T |
42454997 |
tacttctattatcagccgatataataacct |
42454968 |
T |
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