View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_50 (Length: 245)

Name: NF15195_low_50
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_50
NF15195_low_50
[»] chr7 (1 HSPs)
chr7 (19-73)||(24850579-24850633)


Alignment Details
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 24850579 - 24850633
Alignment:
19 atccaagaaagttgtgtttttgagtttcgatattgagagtcatttcctttataac 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24850579 atccaagaaagttgtgtttttgagtttcgatattgagagtcatttcctttataac 24850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University