View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_53 (Length: 240)
Name: NF15195_low_53
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3714283 - 3714505
Alignment:
| Q |
1 |
taattctaatagaaagagtaagtttcaagtaacaacaacatgtaccattttttcaacaaaagtttgatcttaatttcttgcagccctaccaggatttagt |
100 |
Q |
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| T |
3714283 |
taattctaatagaaagagtaagtttcaagtaacaacaacatgtaccattttttcaacaaaagtttgatcttaatttcttgcagccctaccaggatttagt |
3714382 |
T |
|
| Q |
101 |
gggtaggataatctgaatctcaatgcnnnnnnncgataattttcaatccacttcatagtgtacatgacccagtgatcacacgaaagagaaaggactatct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3714383 |
gggtaggataatctgaatctcaatgcaaaaaaacgataattttcaatccacttcatagtgtacatgacccagtgatcacacgaaagagaaaggactatct |
3714482 |
T |
|
| Q |
201 |
attgtttgggtgatggacctggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3714483 |
attgtttgggtgatggacctggt |
3714505 |
T |
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