View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_54 (Length: 239)
Name: NF15195_low_54
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 42889964 - 42890172
Alignment:
| Q |
16 |
atcatcctccaattaactttttccatttcataccatgaggcatcacaataagtgtgtacgtgacactctacattgatgacacacttgaatcctacacata |
115 |
Q |
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| T |
42889964 |
atcatcctccaattaactttttccatttcataccatgaggcatcacaataagtgtgtacgtgacactctacattgatgacacacttgaatcctacacata |
42890063 |
T |
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| Q |
116 |
ctt-gaacacacatatattagaaaaattgtttcttcgctatgttgtcatcgaaacatcaaacgatgtttctttgatttgttgtcatcaaaatattcagtg |
214 |
Q |
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| T |
42890064 |
cttagaacacacatatattagaaaaattgtttcttcgctatgttgtcatcgaaacatcaaacaatgtttctttgatttgttgtcatcaaaatattcggtg |
42890163 |
T |
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| Q |
215 |
tgaagtatt |
223 |
Q |
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| T |
42890164 |
tgaagtatt |
42890172 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 12569570 - 12569637
Alignment:
| Q |
152 |
ctatgttgtcatcgaaacatcaaacgatgtttctttgatttgttgtcatcaaaatattcagtgtgaag |
219 |
Q |
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| T |
12569570 |
ctatgttaacatcaaaacatcatatgatgttcctttgatttgttatcatcaaaatatacggtgtgaag |
12569637 |
T |
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