View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15195_low_6 (Length: 543)
Name: NF15195_low_6
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 41275037 - 41274517
Alignment:
| Q |
19 |
agtcgcaaccaacgctgtgtcattttgtttatctcctttaaatgctaccgttaacggtctcttcaataccggatggtgagttgaaaactttgcattcaat |
118 |
Q |
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| T |
41275037 |
agtcgcaaccaacgctgtgtcattttgtttatctcctttaaatgctaccgttaacggtctcttcaataccggatggtgagttgaaaactttgcattcaat |
41274938 |
T |
|
| Q |
119 |
cctagtggagtccgagcagctgaactagaaacagtcacaactcccataccaagtttgcagaatcagtgtttagaaagaaattcaaatgacagtttctcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41274937 |
cctagtggagtccgagcagctgaactagaaacagtcacaactcccataccaagtttgccgaatcagtgtttagaaagaaattcaaatgacagtttctcaa |
41274838 |
T |
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| Q |
219 |
tgccaagttcctgcaacagcacaatgccattcaattaccaaataactcaagtacataactattgccattcaatcccttgattaatcattcaatttagctt |
318 |
Q |
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| T |
41274837 |
tgccaagttcctgcaacagcacaatgccattcaattaccaaataactcaagtacataactattgccattcaatcccttgattaatcattcaatttagctt |
41274738 |
T |
|
| Q |
319 |
caaatattaataacaaaacaataatatatggagaacaagttaatatattactttactagctaggcacaaataccattcatgcatcagtaagattcttcaa |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41274737 |
caaatattaataccaaaacaataatatatggagaacaagttaatatattactttactagctaggcacaaataccattcatgcatcagtaagattcttcaa |
41274638 |
T |
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| Q |
419 |
tgttcaaacccctatcacatacaattttgtaggagagatcaacaatctccctaaccaaataagaaatttacattttaaattcatagttatctagtatttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41274637 |
tgttcaaacccctatcacatacaattttgtaggagagatcaacaatctccctaaccaaataagaaatttacattttaaattcatagttatctagtatttt |
41274538 |
T |
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| Q |
519 |
tataataatattcatttcagt |
539 |
Q |
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||||| ||||||||||||||| |
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| T |
41274537 |
tataacaatattcatttcagt |
41274517 |
T |
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