View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15195_low_8 (Length: 530)
Name: NF15195_low_8
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15195_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Original strand, 28080001 - 28080511
Alignment:
| Q |
10 |
attattcttattcactctaattacttgtagagttgtagtttctcaatgtagtaatttaagtaaagaaagagtactctctttttacacatatatgagattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28080001 |
attattcttattcactctaattacttgtagagttgtagtttctcaatgtagtaatttaagtaaagaaagagtactctctttttacacatatatgagattt |
28080100 |
T |
|
| Q |
110 |
agtaacatttgaaacatgtaattaaatcnnnnnnn-tgttaaaagtgttactagatagcttct--------tcatagtataatttgtaacaatcaagaat |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
28080101 |
agtaacatttaaaaaatgtaattaaatcaagaaaaatgttaaaagtgttactagatagcttctgtaacagttcatagtattatttgtaacaatcaagaat |
28080200 |
T |
|
| Q |
201 |
gttgcttatttatatttttgcaacactttaatatcactagtaacattgaaacaacgtcttataataatttttgaaaatttgtaaaaaatgtcctaaaatt |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
28080201 |
gtttcttatttatatttttgcaacactttaatatcactagtaacattgaaaaaacgtcttataataactttcgaaaatttgtaaaaaatgtcctaaaatt |
28080300 |
T |
|
| Q |
301 |
gtctaagggcatacactatttgaccaacaacttaatnnnnnnnnnnngcattatattattatataagtaatcactattacttgtcaccattttacatgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28080301 |
gtctaagggcatacactatttgaccaacaacttaataaaaaaaaaa-gcattatatt--tatataagtaatcactattacttgtcaccattttacatgtt |
28080397 |
T |
|
| Q |
401 |
gcaaaagaaaaaccaatagatattattcaaaatcatatgaagataaaacaagtaaagattccatgacttccacccaaggaggcataagccgcgtcttatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28080398 |
gcaaaagaaaaaccaatagatattattcaaaatcatatgaagataaaacaagtcaagattccatgacttccacccaaggaggcataagccgcctcttatt |
28080497 |
T |
|
| Q |
501 |
tggaggtctctcat |
514 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28080498 |
tggaggtctctcat |
28080511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 357 - 508
Target Start/End: Complemental strand, 27931250 - 27931099
Alignment:
| Q |
357 |
tattatataagtaatcactattacttgtcaccattttacatgttgcaaaagaaaaaccaatagatattattcaaaatcatatgaagataaaacaagtaaa |
456 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
27931250 |
tattatataagtagtcactattacttgtcaccattttacatgttgcaaaagaaaaaccaatagatattattcaaaatcatatgaagataaaataagtcag |
27931151 |
T |
|
| Q |
457 |
gattccatgacttccacccaaggaggcataagccgcgtcttatttggaggtc |
508 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
27931150 |
gattccatgacttccatccaaggaggcataagccgcctcttctttcgaggtc |
27931099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 27937054 - 27936970
Alignment:
| Q |
424 |
tattcaaaatcatatgaagataaaacaagtaaagattccatgacttccacccaaggaggcataagccgcgtcttatttggaggtc |
508 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |||| ||||| |||| |||||||||| |
|
|
| T |
27937054 |
tattcaaaatcatatgaagataaaataagtcaggattccatgacttccacccaaggagacatacgccgcctcttctttggaggtc |
27936970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 27937499 - 27937428
Alignment:
| Q |
360 |
tatataagtaatcactattacttgtcaccattttacatgttgcaaaagaaaaaccaatagatattattcaaaa |
432 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
27937499 |
tatataagtaatcactactgcttgtcaccattt-acatgttgcaaaagtaaaagcaatagatattattcaaaa |
27937428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 41573533 - 41573641
Alignment:
| Q |
198 |
aatgttgcttatttatatttttgcaacactttaatatcactagtaacattgaaacaacgtcttataataatttttgaaaatttgtaaaaaatgtcctaaa |
297 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||||||||| ||| || ||| ||||||| ||| || ||||| |||||| |||| |||| |
|
|
| T |
41573533 |
aatgttgcttttttgtatttttgtaacactttaatatcactagtaacataaaaaaaatgtcacataataactttggagaatttataaaaagtgtcgtaaa |
41573632 |
T |
|
| Q |
298 |
attgtctaa |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
41573633 |
gttgtctaa |
41573641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University