View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15195_low_9 (Length: 525)

Name: NF15195_low_9
Description: NF15195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15195_low_9
NF15195_low_9
[»] chr5 (8 HSPs)
chr5 (1-274)||(33807942-33808213)
chr5 (1-274)||(33811596-33811867)
chr5 (1-274)||(33816514-33816785)
chr5 (275-510)||(29234691-29234925)
chr5 (353-510)||(29238548-29238708)
chr5 (96-191)||(16698504-16698601)
chr5 (96-191)||(22763905-22764002)
chr5 (222-274)||(16698618-16698670)
[»] chr6 (4 HSPs)
chr6 (6-274)||(31151926-31152195)
chr6 (77-274)||(22981504-22981710)
chr6 (77-274)||(23806698-23806904)
chr6 (15-198)||(1111378-1111564)
[»] chr3 (10 HSPs)
chr3 (11-274)||(50603138-50603403)
chr3 (77-274)||(44782524-44782733)
chr3 (77-274)||(54967210-54967419)
chr3 (77-262)||(54979854-54980051)
chr3 (18-276)||(31725196-31725448)
chr3 (24-191)||(39298736-39298908)
chr3 (77-193)||(18556392-18556511)
chr3 (222-274)||(17645928-17645981)
chr3 (96-195)||(17645800-17645897)
chr3 (226-274)||(18556305-18556353)
[»] chr1 (3 HSPs)
chr1 (59-274)||(29706854-29707069)
chr1 (439-510)||(26630925-26630996)
chr1 (99-191)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (96-258)||(26514-26674)
[»] chr8 (4 HSPs)
chr8 (77-274)||(41481606-41481815)
chr8 (77-274)||(36167605-36167813)
chr8 (80-269)||(18951129-18951326)
chr8 (228-273)||(18116885-18116930)
[»] chr7 (11 HSPs)
chr7 (77-274)||(4842648-4842857)
chr7 (96-274)||(25857131-25857317)
chr7 (77-275)||(4835574-4835782)
chr7 (77-193)||(13465046-13465165)
chr7 (79-200)||(17845847-17845969)
chr7 (14-183)||(8252686-8252853)
chr7 (77-191)||(24379370-24379487)
chr7 (96-191)||(27341025-27341120)
chr7 (224-274)||(24380113-24380163)
chr7 (204-275)||(24379278-24379347)
chr7 (139-191)||(38994151-38994204)
[»] scaffold0479 (1 HSPs)
scaffold0479 (77-274)||(2727-2936)
[»] chr4 (4 HSPs)
chr4 (77-274)||(9757212-9757422)
chr4 (79-191)||(42682924-42683038)
chr4 (96-193)||(37286972-37287069)
chr4 (230-274)||(25002905-25002947)
[»] scaffold0003 (1 HSPs)
scaffold0003 (96-274)||(342217-342404)
[»] chr2 (2 HSPs)
chr2 (96-189)||(37037942-37038035)
chr2 (222-260)||(37038074-37038112)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 33807942 - 33808213
Alignment:
Q  1 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgta 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33807942 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33808041  T
Q  101 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33808042 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33808139  T
Q  201 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808140 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 33811596 - 33811867
Alignment:
Q  1 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgta 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33811596 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33811695  T
Q  101 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33811696 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33811793  T
Q  201 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811794 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 33816514 - 33816785
Alignment:
Q  1 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgta 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33816514 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33816613  T
Q  101 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33816614 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33816711  T
Q  201 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816712 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 275 - 510
Target Start/End: Complemental strand, 29234925 - 29234691
Alignment:
Q  275 ctttcttcagatactgttggtataagttatttgctttataaattttagatcactgttaatatttttgattttgtgcgagtctaatcatctttatttctgg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  29234925 ctttcttcagatactgttggtataagttatttgctttataaattttagatcactgttaataattt-gattttgtgcgagtctaatcatctttatttctgg 29234827  T
Q  375 gtatttattgattataattgttgttgtaaggtttatatttatgttggtactgatgtttgtaagaatttgcagatgagcttattgccaatgctgcatacat 474  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234826 gtatttattcattataattgttgttgtaaggtttatatttatgttggtactgatgtttgtaagaatttgcagatgagcttattgccaatgctgcatacat 29234727  T
Q  475 cggcacacctggaaaaggtattcttgctgctgatga 510  Q
    ||||||||||||||||||||||||||||||||||||    
T  29234726 cggcacacctggaaaaggtattcttgctgctgatga 29234691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 353 - 510
Target Start/End: Complemental strand, 29238708 - 29238548
Alignment:
Q  353 gtctaatcatctttatttctgggtatttattgatta--ta-attgttgttgtaaggtttatatttatgttggtactgatgtttgtaagaatttgcagatg 449  Q
    |||||||||| |||| || |||||||||||||||||  || ||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  29238708 gtctaatcatgtttaattttgggtatttattgattaattagattattgttgtaaggtttatagttttgttggtactgatgtttgtgagaatttgcagatg 29238609  T
Q  450 agcttattgccaatgctgcatacatcggcacacctggaaaaggtattcttgctgctgatga 510  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  29238608 agcttatcgccaatgccgcctacatcggcacacctggaaaaggtattcttgctgctgatga 29238548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  96 ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 191  Q
    ||||||||||||||| ||||||||||| | ||||||||| | | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  96 ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 191  Q
    ||||||||||||||| |||||||   | | ||||||||||| |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 16698618 - 16698670
Alignment:
Q  222 agtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    |||||||||| ||||||||||||||| ||||||||||||   |||||||||||    
T  16698618 agtgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca 16698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 31152195 - 31151926
Alignment:
Q  6 agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgtattccc 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| ||||| ||||||||||||||||||||||||    
T  31152195 agagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattccc 31152096  T
Q  106 attattattatagtggagatttaagaggcctacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtca 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  31152095 attattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtca 31151996  T
Q  205 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31151995 ttttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaag 173  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  174 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 264  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| |||||||||||||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  265 tttcccaaca 274  Q
    ||||||||||    
T  22981701 tttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaag 173  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  174 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 264  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| |||||||||||||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  265 tttcccaaca 274  Q
    ||||||||||    
T  23806707 tttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  15 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttacgtccacctgagggtgaagatttgtattcccattatta 112  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||| ||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  113 ttatagtgg-agatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 198  Q
    ||||  | | ||||||||||| | || | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 50603138 - 50603403
Alignment:
Q  11 gtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgtattcccatt 108  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||| || | ||||||||||||||||||||||    
T  50603138 gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt 50603237  T
Q  109 attattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50603238 attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt 50603337  T
Q  209 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||| | | ||||||||||||||    
T  50603338 acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaaca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 44782733 - 44782524
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  173 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  44782536 gcatttcccaaca 44782524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 54967419 - 54967210
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||| | |||||||||||||||||| || |||| ||||||||    
T  54967419 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54967320  T
Q  173 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  54967319 ggttttccacgctaaaattctctt-tgtgtcattacgcttttatttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcag 54967223  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  54967222 gcatttcccaaca 54967210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 262
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcc-ttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||| | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  173 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||| ||||||||| | || ||||||           |||| |||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  54979951 ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag 54979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 31725448 - 31725196
Alignment:
Q  18 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttacgtccacctgagggtgaagatttgtattcccattattattata 117  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || | |||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  118 gtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 217  Q
     ||||  | |||| |  |||  | |    |||||||||||||| ||  ||| ||||||||||||| ||||| ||   || |||| ||| || ||||||||    
T  31725350 ttggatgtctaagggatctatagattgtttggtttttccttacccatgttgtgaaggttttccacactaaactt---ttttgtggcatatt-cgtttccg 31725255  T
Q  218 ctaaagtgccta-ttttgagttcacggaggagggaaattatgcaggcatttcccaacact 276  Q
    ||||| |||||| |||||| ||||||||| |||  |||||||||| ||||||||||||||    
T  31725254 ctaaa-tgcctatttttgaattcacggagaaggtgaattatgcagacatttcccaacact 31725196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  24 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttacgtccacctgagggtgaagat-ttgtattcccattattattata 117  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||  ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  118 gtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 191  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaag 173  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  ||||||||||    ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  174 gttttccacgctaaaatttt 193  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
Q  222 agtgcctattttgagttcacggaggagggaaattatgcagg-catttcccaaca 274  Q
    |||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  17645928 agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca 17645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  96 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 195  Q
    |||||||  |||||| |||||||||||  ||||||| ||  | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 18556353 - 18556305
Alignment:
Q  226 cctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    ||||||||||||||| |||||||| |||||||| |||  ||||||||||    
T  18556353 cctattttgagttcatggaggaggcaaattatgtaggtgtttcccaaca 18556305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  59 ttgagatacatagttacgtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcctt 158  Q
    |||||||||||||||| ||||||| |||||||||||||| |  | |||||||||||||||||||||||||||||| ||| | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  159 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatg 258  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| |||||| |||||||||| ||| |||||||||    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  259 caggcatttcccaaca 274  Q
     |||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 26630996 - 26630925
Alignment:
Q  439 atttgcagatgagcttattgccaatgctgcatacatcggcacacctggaaaaggtattcttgctgctgatga 510  Q
    |||||||||||| || |||||||||||||| ||||| ||| | |||||||| ||||| ||||||||||||||    
T  26630996 atttgcagatgaactcattgccaatgctgcttacattggctctcctggaaagggtatccttgctgctgatga 26630925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  99 tattcccattattattatagtggagatttaagaggcctacgggtcccgtg-gtttttccttactcacattgagaaggttttccacgctaaaatt 191  Q
    ||||||||||||||||||||||||  |||||||| ||   ||  ||||||  ||||||||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 26674 - 26514
Alignment:
Q  96 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 195  Q
    |||||||| | |||| |||| ||||||  ||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  26674 ttgtattctcgttatcattagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgt 26575  T
Q  196 tgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatg 258  Q
    |  |||| ||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||    
T  26574 t--gtgttattttacgttttcgctaaagtgtctattttgagttcacgaaggagggagattatg 26514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 41481606 - 41481815
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||  |||| |||| ||||||||    
T  41481606 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaa 41481705  T
Q  173 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  41481706 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag 41481802  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  41481803 gcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 36167605 - 36167813
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| |||||||||  |||| |||| ||||||||    
T  36167605 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaa 36167703  T
Q  173 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  36167704 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcag 36167800  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  36167801 gcatttcccaaca 36167813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  80 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaaggt 175  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||| |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  176 tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcc 269  Q
    |||||| ||||||||| |||    |  |      |||| | |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 18116930 - 18116885
Alignment:
Q  228 tattttgagttcacggaggagggaaattatgcaggcatttcccaac 273  Q
    |||||| ||||||| || |||| |||||||||||||||||||||||    
T  18116930 tattttaagttcacagacgaggtaaattatgcaggcatttcccaac 18116885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  173 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  4842660 gcatttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 25857317 - 25857131
Alignment:
Q  96 ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaatttt 193  Q
    ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||      
T  25857317 ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt-- 25857220  T
Q  194 gttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
      | ||||||           |||| |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25857219 -ctctgtgtcattacgcttatatttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaaca 25857131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 77 - 275
Target Start/End: Complemental strand, 4835782 - 4835574
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||| ||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||  |||| |||||||||||||    
T  4835782 tccacctaagggtgaagttgttgcattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 4835683  T
Q  173 ggttttccacgctaaaattttgt-tgt------gtgt-cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 264  Q
    ||||||||||||||||||| | | |||      || |  |||| |||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||    
T  4835682 ggttttccacgctaaaattctctgtgtcattacgtttatatttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggca 4835585  T
Q  265 tttcccaacac 275  Q
    |||||||||||    
T  4835584 tttcccaacac 4835574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaag 173  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  174 gttttccacgctaaaatttt 193  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  79 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttt 177  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  ||||||||| | |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  178 tccacgctaaaattttgttgtgt 200  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  14 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttacgtccacctgagggtgaagatttgtattcccatta 109  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  110 ttattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacg 183  Q
    |||||| | ||  || ||||||| | |||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcc-ttactcacattgagaag 173  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  174 gttttccacgctaaaatt 191  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  96 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 191  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  224 tgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 24379347 - 24379278
Alignment:
Q  204 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacac 275  Q
    ||||||||||||| |||  ||||||||||| |||||||||||||| ||||||||| || ||||| |||||||    
T  24379347 attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaacac 24379278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 38994204 - 38994151
Alignment:
Q  139 gggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 191  Q
    |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994204 gggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 2727 - 2936
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa 172  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  173 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcag 261  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| ||||||||||||||||||| ||||||||||||||     
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  262 gcatttcccaaca 274  Q
    |||||||||||||    
T  2924 gcatttcccaaca 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 9757422 - 9757212
Alignment:
Q  77 tccacctgagggtgaagat-ttgtattcccattattattatagtgga---gatttaagaggcctacgggtcccgtggttttt-ccttactcacattgaga 171  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||     ||||||||||| | |||||||||||||||| |||| ||||||||||||    
T  9757422 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgaga 9757323  T
Q  172 aggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgca 260  Q
    |||||||||||||||||||| | || ||||||           |||| |||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  9757322 aggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgca 9757226  T
Q  261 ggcatttcccaaca 274  Q
    ||||||| ||||||    
T  9757225 ggcatttaccaaca 9757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  79 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggtt 176  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  177 ttccacgctaaaatt 191  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  96 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 193  Q
    ||||||||  |||||||||||||||||  ||||||| || || |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 25002947 - 25002905
Alignment:
Q  230 ttttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  25002947 ttttgagttcacggag-agggaaattatgca-gcatttcccaaca 25002905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
Q  96 ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 192  Q
    ||||||||||||||| ||||||||||| | ||||||||||| | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  193 tgttgtgtgtc---------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 274  Q
    | ||||||            |||| ||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  96 ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 189  Q
    |||||||| ||||||  |||||||| |  ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 37038074 - 37038112
Alignment:
Q  222 agtgcctattttgagttcacggaggagggaaattatgca 260  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaattatgca 37038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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