View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15196_high_2 (Length: 273)
Name: NF15196_high_2
Description: NF15196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15196_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 34367963 - 34367853
Alignment:
| Q |
165 |
cagccaatatgtgatgcttataatatat--tgataagaaatattaccactataatattacagaaaatacttcccacccaacataaacaatttagagcaaa |
262 |
Q |
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| T |
34367963 |
cagccaatatgtgatgcttataatatatattgataagaaatattaccactataatattacagaaaatacttcccacccaacataaacaatttagagcaaa |
34367864 |
T |
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| Q |
263 |
caatacacaca |
273 |
Q |
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| T |
34367863 |
caatacacaca |
34367853 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 34368119 - 34368070
Alignment:
| Q |
8 |
cgaagaatatacataattaaattgtgtcaattaatatgaaacgtgaggag |
57 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34368119 |
cgaataatatacatagttaaactgtgtcaattaatatgaaacgtgaggag |
34368070 |
T |
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